PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_25239A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family B3
Protein Properties Length: 390aa    MW: 43643.4 Da    PI: 9.7288
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_25239AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.48.1e-1620911893
                               --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                         B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                               +p +f e  ++++++++ ++l+ +sg++Wev+l      ++  +tkGWk+F++++ L +g f+vF++dg+ +f   
  Oropetium_20150105_25239A 20 IPPTFQEYLQEPPNTPRLVSLKGPSGNTWEVEL--VLDEQGLSFTKGWKKFARDHSLVSGQFMVFTYDGHLQF--S 91
                               89999855599999*******************..66666688************************997666..3 PP
2B359.17.6e-19284375398
                                EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                         B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                                +v++ s+v     + +p +f++e    ++eskt+tl d++g+sW+vk+ y + +g   +++GW +F+  n+L+  D++vF+l +
  Oropetium_20150105_25239A 284 QVMMESYVYVGFFMNIPCEFVRESL--PQESKTMTLWDPQGKSWDVKYVYYNDRGVAAFSGGWGKFALGNNLEKFDVCVFELFK 365
                                68999****************9885..34789*************************************************876 PP

                                SSEE..EEEEE- CS
                         B3  87 rsefelvvkvfr 98 
                                +   + +v+++r
  Oropetium_20150105_25239A 366 E--DNIKVHIYR 375
                                4..445788776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.2E-51298IPR003340B3 DNA binding domain
SuperFamilySSF1019365.36E-171796IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-131992IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-171996IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.8022098IPR003340B3 DNA binding domain
CDDcd100175.15E-132096No hitNo description
Gene3DG3DSA:2.40.330.101.9E-26273375IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-26275375IPR015300DNA-binding pseudobarrel domain
CDDcd100172.24E-27280375No hitNo description
SMARTSM010193.8E-15282377IPR003340B3 DNA binding domain
PROSITE profilePS5086314.071282377IPR003340B3 DNA binding domain
PfamPF023624.0E-17284375IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MSRGNTGAAN QITACVWHAI PPTFQEYLQE PPNTPRLVSL KGPSGNTWEV ELVLDEQGLS  60
FTKGWKKFAR DHSLVSGQFM VFTYDGHLQF SVVMFSLAGV RDRSARAVQP SEDRVVKLEE  120
EEGVADDHVA SRSEESVPLV ERNRRTSRNR VTQGNATVAA TLEASAPRVE PSGRSRRRGA  180
RQANVSGEPS GNVSVADTLE VSAAPMATSG RSTMKRARQA NDVAENVTTP KRKSMAPKKP  240
EQIASKKFRQ PVLISQRRPV TEEEKNHAFE RAKEFKSQNP FSVQVMMESY VYVGFFMNIP  300
CEFVRESLPQ ESKTMTLWDP QGKSWDVKYV YYNDRGVAAF SGGWGKFALG NNLEKFDVCV  360
FELFKEDNIK VHIYRVVPEI TPLIRKSSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A9e-1525537622142B3 domain-containing transcription factor VRN1
4i1k_B9e-1525537622142B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_25239A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827675.11e-118B3 domain-containing protein Os11g0197600-like
RefseqXP_025827676.11e-118B3 domain-containing protein Os11g0197600-like
TrEMBLA0A0A9DCS31e-123A0A0A9DCS3_ARUDO; Uncharacterized protein
STRINGPavir.Ha01581.1.p1e-120(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44613766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-23B3 family protein