PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_25237A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family B3
Protein Properties Length: 388aa    MW: 43521 Da    PI: 8.4258
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_25237AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.71.1e-146722999
                               -..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                         B3 29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                               +++ ++ ++l+ +sg++Wev+l      ++  +tkGWkeF+ ++ L +g  + F++dgrs+f  +v vf++
  Oropetium_20150105_25237A  6 PPNAPRLVSLKGPSGKTWEVEL--VSDAQGLGFTKGWKEFALDHSLVAGHLLFFTYDGRSQF--FVAVFSA 72
                               5667889***************..88888999***************************999..9999986 PP
2B358.31.4e-18282373398
                                EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                         B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                                +v++ s+v +   l +p +f++e    ++esk++tl d++g+sW+vk+ y++ +g   +++GW +F+  n+L+  D++vF+l +
  Oropetium_20150105_25237A 282 QVMMDSYVYEAFFLNIPCEFVQESL--PQESKKMTLWDPQGKSWDVKYVYCNDRGVGSFSGGWGKFALGNNLEKFDVCVFELFK 363
                                6899*****************8774..34789*********************99999***********************876 PP

                                SSEE..EEEEE- CS
                         B3  87 rsefelvvkvfr 98 
                                +   + +v+++r
  Oropetium_20150105_25237A 364 E--DNIKVHIYR 373
                                4..445788776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.846173IPR003340B3 DNA binding domain
SMARTSM010194.0E-4273IPR003340B3 DNA binding domain
PfamPF023625.3E-12472IPR003340B3 DNA binding domain
CDDcd100177.33E-14671No hitNo description
Gene3DG3DSA:2.40.330.105.0E-16774IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-15773IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-25272373IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-25273373IPR015300DNA-binding pseudobarrel domain
CDDcd100176.69E-25278373No hitNo description
PROSITE profilePS5086314.128280375IPR003340B3 DNA binding domain
SMARTSM010194.0E-15280375IPR003340B3 DNA binding domain
PfamPF023621.5E-16282373IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
EYLQEPPNAP RLVSLKGPSG KTWEVELVSD AQGLGFTKGW KEFALDHSLV AGHLLFFTYD  60
GRSQFFVAVF SASGVYDKSA LDVQPSEDIA IKQEEEEGFP DVNDDSRSEE SAPPRERSGR  120
KTRKRVTQAN AVTENVDVAD TLAISLPPVE PTRRITRKGA RHANAGMDSV GVAGTLEESD  180
PHVEPSGRST IKRARRASDV VEYFTAPKRQ SNAQKKPEKR KSEVTIHTSN AAPTVINSNK  240
VVWKKFRQPA VISRRRPVTE EEKNHAFERA REFKSTNPSA VQVMMDSYVY EAFFLNIPCE  300
FVQESLPQES KKMTLWDPQG KSWDVKYVYC NDRGVGSFSG GWGKFALGNN LEKFDVCVFE  360
LFKEDNIKVH IYRVVPEITP LIRKSSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1325337422142B3 domain-containing transcription factor VRN1
4i1k_B1e-1325337422142B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_25237A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827675.11e-111B3 domain-containing protein Os11g0197600-like
RefseqXP_025827676.11e-111B3 domain-containing protein Os11g0197600-like
TrEMBLA0A0A9DCS31e-113A0A0A9DCS3_ARUDO; Uncharacterized protein
STRINGPavir.Ha01581.1.p1e-114(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44613766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.16e-16B3 family protein