PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_25161A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 175aa    MW: 18609.8 Da    PI: 8.4995
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_25161AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000172446123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               ++C+ Cgk F +   L  H ++H
  Oropetium_20150105_25161A 24 FRCTVCGKAFASYQALGGHKSSH 46
                               89**********99999999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.4E-41947IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.3E-132348IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.8242451IPR007087Zinc finger, C2H2
SuperFamilySSF576672.32E-82446No hitNo description
SMARTSM003550.0222446IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
SuperFamilySSF576672.32E-876103No hitNo description
PfamPF139122.5E-1181104IPR007087Zinc finger, C2H2
SMARTSM003550.2681103IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.57781108IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MHEAGHGGKT TTPVVAVEEE ELRFRCTVCG KAFASYQALG GHKSSHRKPP TGDHYAAALF  60
AAAASASMED DHSSEMTAGP HRCTICRKSF ATGQALGGHK RCHYWDGTSV LVSVSAATGS  120
TSARTGSSAV TMRNFDLNLM PLPENAGTKR WAEEEEVQSP LPIKKKLRTS SAQY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in abscisic acid (ABA) signaling. Required for the regulation of the cross-talk between NADPH oxidase, hydrogen peroxide and MAP kinase in ABA signaling. Regulates the expression of the NADPH oxidase genes RBOHB and RBOHE, and the MAPK genes MPK1, MPK4, MPK5, MPK7 and MPK14. Regulates ABA-induced hydrogen peroxide production and antioxidant defense. Required for tolerance to water stress and oxidative stress. {ECO:0000269|PubMed:25071223}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_25161A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and hydrogen peroxide. {ECO:0000269|PubMed:25071223}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020402734.13e-65zinc finger protein 36
SwissprotQ75KE52e-60ZFP36_ORYSJ; Zinc finger protein 36
TrEMBLA0A1D6K6466e-64A0A1D6K646_MAIZE; Zinc finger protein AZF2
STRINGGRMZM2G069176_P011e-64(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34123273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04340.18e-26zinc finger of Arabidopsis thaliana 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Zhang H, et al.
    A novel rice C2H2-type zinc finger protein, ZFP36, is a key player involved in abscisic acid-induced antioxidant defence and oxidative stress tolerance in rice.
    J. Exp. Bot., 2014. 65(20): p. 5795-809
    [PMID:25071223]
  4. Li W, et al.
    A Natural Allele of a Transcription Factor in Rice Confers Broad-Spectrum Blast Resistance.
    Cell, 2017. 170(1): p. 114-126.e15
    [PMID:28666113]