PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_25145A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 363aa    MW: 39378.8 Da    PI: 8.9833
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_25145AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.54.9e-3290146259
                                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                dDgynWrKYGqK vkg e+prsYY+Ct+ +Cpvkkkversa d++v++i+Y+g+Hnh+
  Oropetium_20150105_25145A  90 DDGYNWRKYGQKAVKGGEYPRSYYKCTQLSCPVKKKVERSA-DGQVTQIIYRGQHNHH 146
                                8****************************************.***************7 PP
2WRKY104.74.9e-33248306159
                                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC vkk++ers++dpk+v++tYeg+H h+
  Oropetium_20150105_25145A 248 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYQGCDVKKHIERSSQDPKAVITTYEGKHSHD 306
                                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.8E-2977148IPR003657WRKY domain
PROSITE profilePS5081124.23784148IPR003657WRKY domain
SuperFamilySSF1182902.09E-2587148IPR003657WRKY domain
SMARTSM007741.6E-3389147IPR003657WRKY domain
PfamPF031063.1E-2490146IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-36235308IPR003657WRKY domain
SuperFamilySSF1182901.83E-29240308IPR003657WRKY domain
PROSITE profilePS5081137.183243308IPR003657WRKY domain
SMARTSM007741.0E-38248307IPR003657WRKY domain
PfamPF031061.1E-25249306IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MSHQQALAQV TAQAVHSPYN MVNQTDYSLP FSSTTTPALI SQNVNSSANL TSTATKVVST  60
HPSRKGNRNI QSNEISQVQT SALNADKPAD DGYNWRKYGQ KAVKGGEYPR SYYKCTQLSC  120
PVKKKVERSA DGQVTQIIYR GQHNHHRPPK RRPKDGGELQ VEGDDFHENE DAPTRSEPSS  180
HDHSGKVEAS NDGPAGPSVS GSSDSEDNGD DASRAENGDA GPANANRRRI PTPAQRIIVQ  240
TTSDVDLLDD GYRWRKYGQK VVKGNPHPRS YYKCTYQGCD VKKHIERSSQ DPKAVITTYE  300
GKHSHDVPAA RNSSHAAANA NASSSSSVPH RGPNSASSSR RADLQNASSA SSMLLKEENE  360
IT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-3890309878Probable WRKY transcription factor 4
2lex_A2e-3890309878Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146151RPPKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_25145A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002467677.20.0probable WRKY transcription factor 4
SwissprotQ9ZQ705e-90WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A0A9G7H50.0A0A0A9G7H5_ARUDO; Uncharacterized protein
STRINGSb01g032120.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.17e-79WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]