PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_25058A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | MYB | ||||||||
Protein Properties | Length: 329aa MW: 36338.4 Da PI: 7.0897 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.3 | 5.5e-16 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++ + ++G g+W+++++ g+ R++k+c++rw +yl Oropetium_20150105_25058A 16 RGLWSPEEDEKLYNHIIRYGVGCWSSVPKLAGLERCGKSCRLRWINYL 63 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.5 | 9.6e-16 | 69 | 112 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E++l++ ++k lG++ W+ Ia+ ++ gRt++++k++w++ Oropetium_20150105_25058A 69 RGSFSQQEEDLIISLHKILGNR-WSQIASQLP-GRTDNEIKNFWNS 112 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-23 | 11 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.404 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.99E-29 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.8E-13 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-14 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.07E-11 | 19 | 63 | No hit | No description |
PROSITE profile | PS51294 | 25.073 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-25 | 67 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-14 | 69 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.10E-11 | 71 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MGREAAAMTT RPKLRRGLWS PEEDEKLYNH IIRYGVGCWS SVPKLAGLER CGKSCRLRWI 60 NYLRPDLKRG SFSQQEEDLI ISLHKILGNR WSQIASQLPG RTDNEIKNFW NSCIKKKLRQ 120 RGIDPSTHKP LNEDAVAAEP NDECKQQPQH LPAIGAAAAG SSDNRLAPPH SPSAVSFDPL 180 SVTNVAAAAM QGSYGTGAAH SFRSDNLCDY GVSSDAGTYS AYTGGGDSSS NNSNSTWTXX 240 XXXXXXXXXX MPHMDIFARD MEPYAFDPAK FSSPWNNHPQ QHHHHHHHHD AGGAAASFPI 300 RSMSRDLPES CFDLARGALE DEFSIDFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-30 | 12 | 118 | 3 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_25058A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679421 | 1e-148 | HF679421.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB15 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004968898.1 | 1e-155 | myb-related protein Hv33 | ||||
Refseq | XP_004968899.1 | 1e-155 | myb-related protein Hv33 | ||||
Swissprot | P20027 | 7e-78 | MYB3_HORVU; Myb-related protein Hv33 | ||||
TrEMBL | A0A0A9AWX7 | 1e-157 | A0A0A9AWX7_ARUDO; Uncharacterized protein | ||||
STRING | Si002220m | 1e-154 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11164 | 30 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 5e-74 | myb domain protein 86 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_25058A |