PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_24967A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 522aa    MW: 54444.6 Da    PI: 6.8431
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_24967AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.7e-30234293159
                                ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+Hnh+
  Oropetium_20150105_24967A 234 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAaGCPVRKQVQRCADDMSILITTYEGTHNHP 293
                                58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-32219293IPR003657WRKY domain
SuperFamilySSF1182901.7E-27227294IPR003657WRKY domain
PROSITE profilePS5081128.311229295IPR003657WRKY domain
SMARTSM007743.4E-37234294IPR003657WRKY domain
PfamPF031062.3E-27235293IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MFQGEKQLGS HDGQLKDKIK DDEEIQNIDF FKPIEKSSSK KELQVEEDKL ACTRAEMGEV  60
RKENERLKTM LSSVVEEYRS LQMHFQEVIQ QVQAKKLANP TAALPTDEQP GFISLKLSTN  120
ISMHKEEKSG ITESKAREEL MTIKEGGLTL GLSDCKIGTT NSSNIQPNVL TLSPEGSSED  180
ATDDATETTD QWSQGKAQKS SRNGGVEVEE DIGPLPQVKK ARVSVRARCD APTMNDGCQW  240
RKYGQKIAKG NPCPRAYYRC TVAAGCPVRK QVQRCADDMS ILITTYEGTH NHPLSASATA  300
MASTTSAAAS MLTSGASSAS HHPMMASAAG LSFGGFPSAA GADASKPPFF LPTGAAASIT  360
STPYPSTSFS FSSSSTAAWP AAGVGYLTYG SPTTAASYSG GKFYQQQKAS ASGTAPAGVL  420
TDTIAKAITS DPGFHTALAA AITSYVGTQQ SGGSSSAGGD NGGGILPGLH LGLGPSSTSS  480
LPAVAAAQAS SRRTFLQPSL LALSGSDSAS TSPVENRGHV S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-202342961778Probable WRKY transcription factor 4
2lex_A1e-202342961778Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_24967A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2485558e-88AK248555.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf78b10, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964541.10.0probable WRKY transcription factor 72
TrEMBLA0A368QQA30.0A0A368QQA3_SETIT; Uncharacterized protein
STRINGPavir.Db02233.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50473862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.13e-57WRKY DNA-binding protein 72