PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_24933A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 313aa    MW: 34739.3 Da    PI: 6.0899
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_24933AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.51.1e-4861341129
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                                lppGfrFhPtd el v+yLk+k+ gk++++ ++i+++d+yk+ PwdLp+  ++++++  wyfF++r++ky++g r+nr+t  gy
  Oropetium_20150105_24933A   6 LPPGFRFHPTDIELTVYYLKRKLLGKHIRC-NAITDIDLYKFAPWDLPEkaSLESNDLVWYFFCRRNRKYSSGVRTNRSTGVGY 88 
                                79****************************.89***************52345556669************************* PP

                        NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                Wkatgkd++v+  +++ vg+k+tLvf+ g+ p+g +tdWvm eyrle
  Oropetium_20150105_24933A  89 WKATGKDRPVIY-NSRIVGMKRTLVFHLGKPPRGDRTDWVMYEYRLE 134
                                ************.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-583162IPR003441NAC domain
PROSITE profilePS5100553.5716162IPR003441NAC domain
PfamPF023651.7E-257133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MAKTSLPPGF RFHPTDIELT VYYLKRKLLG KHIRCNAITD IDLYKFAPWD LPEKASLESN  60
DLVWYFFCRR NRKYSSGVRT NRSTGVGYWK ATGKDRPVIY NSRIVGMKRT LVFHLGKPPR  120
GDRTDWVMYE YRLEDKDLAA CGVKLVWFSL CDACVLCKIF QKSGQGPKIG AQYGAPFNEA  180
DWNDCIMEYS SCVPSVTPCP PESSHDGLYS AGQHLAVCND NNVSLGLLSE SNGSANHVQV  240
CPNRAPDIPF DSIHLHLLAE IISSPSMNLL CTADEDGSQA GSAPDIDNND RISLDGNETI  300
FDGIDDLSPQ SM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-48216811174Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_24933A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0683711e-157BT068371.1 Zea mays full-length cDNA clone ZM_BFb0135E15 mRNA, complete cds.
GenBankBT0685321e-157BT068532.1 Zea mays full-length cDNA clone ZM_BFb0292O13 mRNA, complete cds.
GenBankBT0839011e-157BT083901.1 Zea mays full-length cDNA clone ZM_BFb0052I14 mRNA, complete cds.
GenBankKJ7279521e-157KJ727952.1 Zea mays clone pUT6050 NAC transcription factor (NAC120) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823524.11e-163NAC domain-containing protein 82-like
RefseqXP_025823525.11e-163NAC domain-containing protein 82-like
RefseqXP_025823526.11e-163NAC domain-containing protein 82-like
RefseqXP_025823527.11e-163NAC domain-containing protein 82-like
TrEMBLA0A2S3IBX81e-161A0A2S3IBX8_9POAL; Uncharacterized protein
STRINGPavir.J14942.1.p1e-160(Panicum virgatum)
STRINGSi022216m1e-160(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP148561721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.12e-76NAC domain containing protein 103