PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_24912A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 309aa    MW: 33633.6 Da    PI: 7.9674
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_24912AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.31.5e-49141581128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknrat 78 
                                +ppGfrFhPt+eelv +yL++kv+++k++l ++i+evd+y++ePwdL++        +++ ++++fFs +d+ky++g+r+nrat
  Oropetium_20150105_24912A  14 VPPGFRFHPTEEELVGYYLARKVASQKIDL-DIIQEVDLYRIEPWDLQRrlqlggGGSGSGDQCFFFSYKDRKYPSGTRTNRAT 96 
                                69****************************.99**************96354443222255699******************** PP

                        NAM  79 ksgyWkatgkdkevlsk.....kgel.........vglkktLvfykgrapkgektdWvmheyrl 128
                                ++g+Wkatg+dk+vls+     +            +g++ktLvfykgrap+g+ktdW++heyrl
  Oropetium_20150105_24912A  97 AAGFWKATGRDKPVLSSsssssR--SgsngagrivIGMRKTLVFYKGRAPNGRKTDWIIHEYRL 158
                                ****************8665550..1555666667***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-5413184IPR003441NAC domain
PROSITE profilePS5100552.92314184IPR003441NAC domain
PfamPF023652.1E-2515158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEAVVVDHEC CGGVPPGFRF HPTEEELVGY YLARKVASQK IDLDIIQEVD LYRIEPWDLQ  60
RRLQLGGGGS GSGDQCFFFS YKDRKYPSGT RTNRATAAGF WKATGRDKPV LSSSSSSSRS  120
GSNGAGRIVI GMRKTLVFYK GRAPNGRKTD WIIHEYRLLL PSTNNPQQQQ REQEGWVVCR  180
AFRKPTTIPN NIPPPLAGAA GAYAFFGSST TSSSSSWLSH QPQLPLDLSY YPPYADEPPH  240
KTSNNNLLLM RIPQLIDDDS PTAAVHIQGS GGGGRYDDDA AGSIIDWNFL DTLLSSSTAA  300
ASSFAAPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-4571848168Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_24912A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448830.12e-95NAC domain-containing protein 30
RefseqXP_021318357.12e-95NAC domain-containing protein 30
TrEMBLC5YB404e-94C5YB40_SORBI; Uncharacterized protein
STRINGSb06g034010.17e-95(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25943791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36160.15e-66NAC domain containing protein 76