PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_24904A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 427aa    MW: 45945.1 Da    PI: 9.952
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_24904AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.27.7e-07185207223
                                EETTTTEEESSHHHHHHHHHH.T CS
                    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                +CpdCg+ F r+++L+ H++  H
  Oropetium_20150105_24904A 185 SCPDCGEIFVRQESLQLHQSIrH 207
                                8******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.2E-4183203IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.141184208IPR007087Zinc finger, C2H2
PROSITE patternPS000280184207IPR007087Zinc finger, C2H2
SuperFamilySSF563995.18E-11209421No hitNo description
Gene3DG3DSA:3.90.228.101.3E-6212420IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MVEATSRAAR KSSSGTSMKK GKVPVPEKKK KPKQSRQCAE PAAESPSYRL ALRSLFSCRN  60
SSHAPAAAPP PSDRSSSKSK QQLGCSSAPS ICKANNRSSS TKAPPPDDAT AAKRRASVSG  120
GSSERCVKKP PLLSLDSKLQ GSSSSSSSTG GGSFRAGMQL RRLSGCYECH MVVDPSSSMR  180
AAICSCPDCG EIFVRQESLQ LHQSIRHAVC ELGSDDTSRN IIEIIFQSSW LKKQSPVCRV  240
ERILKVHNSA RTLARFEEYR DAVKAKARKK HPRCTADGNE LLRXXXXXXX XXXGLHGATH  300
LCGACAACAI IRDGFTTTDA AGGIRTMATS GRAHDACVVE DADEQSSTSS TSSRAMLVCR  360
VIAGRVXXXX XXXXXXXXXX XXXXXXXXXX XXXAGVYSNM EELQVFNPRA ILPCFVVIYS  420
YKAAAP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_24904A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9682182e-97EU968218.1 Zea mays clone 316720 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824982.11e-145uncharacterized protein LOC112900370
TrEMBLA0A2S3IBV11e-143A0A2S3IBV1_9POAL; Uncharacterized protein
STRINGGRMZM2G136494_P011e-135(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.18e-80C2H2-like zinc finger protein