PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_24867A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | C2H2 | ||||||||
Protein Properties | Length: 432aa MW: 46564.5 Da PI: 5.7476 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 23.3 | 1.7e-07 | 164 | 186 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F+r nL+ H+r H Oropetium_20150105_24867A 164 HTCKVCGKGFKRDANLRMHMRGH 186 79*******************98 PP | |||||||
2 | zf-C2H2 | 11.6 | 0.00084 | 256 | 279 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C Cg k+Fs +L++H + + Oropetium_20150105_24867A 256 YVCRRCGvKRFSVLADLRTHEKHC 279 9*******************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.32E-6 | 162 | 189 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.2E-6 | 164 | 190 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.404 | 164 | 191 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0011 | 164 | 186 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 3.4E-4 | 165 | 186 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 166 | 186 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 38 | 218 | 251 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 24 | 256 | 278 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MAEAQYQHNQ ATTTGQSSAG GDPTTTALTY LSFLEKKIGY LRGIVLSAAP RQIVSAELSC 60 IAVQLVSISD SLAAAAATAD QHDEDAVAKH SSPPPAALFF AGTAHEKGDS DEDYSSNHDL 120 HYSGIRGDHR AAADDDDDDG SVRVPSSYEV IQLDEEEILA PHVHTCKVCG KGFKRDANLR 180 MHMRGHGDEY KTLAALAKPA APPSSSSSPA TNRRLCFYSC PYAGCKRNRE HRNFQPLKTA 240 VCVKNHYRRS HCDKGYVCRR CGVKRFSVLA DLRTHEKHCG RDRWTCSCGT SFSRKDKLFG 300 HVAAFDGHAP ALPPEPEEGD ENAAANNGGS GGSSTDQLLM MDNTETVAGG GIMRSIECFS 360 DNVFGDTSFN DCADDVKGFA FPDDARCLLE DARGLHHQST TMSLDSCDFD GLDLFGAPAG 420 FEFGNANMME F* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_24867A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK366623 | 2e-38 | AK366623.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2045A04. | |||
GenBank | AK366708 | 2e-38 | AK366708.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2046B02. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025794847.1 | 1e-149 | zinc finger protein STOP1 homolog | ||||
TrEMBL | A0A3L6SDL0 | 1e-149 | A0A3L6SDL0_PANMI; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like | ||||
STRING | Pavir.J01834.1.p | 1e-150 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1512 | 38 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 3e-82 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_24867A |