PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_24671A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | LBD | ||||||||
Protein Properties | Length: 227aa MW: 24098.9 Da PI: 5.8518 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.3 | 2.7e-38 | 28 | 129 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C aCk+lrrkC+++C++apyf +e+ +++fa+vhk+FGasnv+kll+++pe++r da+ ++++eA++r+r+PvyG+v++i +l Oropetium_20150105_24671A 28 PCGACKFLRRKCVSECIFAPYFEQEHgAAHFAAVHKVFGASNVSKLLHQIPEDKRLDAVITVCFEAQCRLRNPVYGCVSHIIAL 111 7*********************999979******************************************************** PP DUF260 84 qqqleqlkaelallkeel 101 q+q+ +l++el++++++l Oropetium_20150105_24671A 112 QEQITTLQSELNYVQNQL 129 **************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.254 | 27 | 129 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.4E-38 | 28 | 126 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MFVGGTSSGG AGGXXXXXXX XXXXXXGPCG ACKFLRRKCV SECIFAPYFE QEHGAAHFAA 60 VHKVFGASNV SKLLHQIPED KRLDAVITVC FEAQCRLRNP VYGCVSHIIA LQEQITTLQS 120 ELNYVQNQLA AMEKQQSQVP PLPAFPQMSM SVGGFSDINL DLSFLLDEEA PPQQQQQHVN 180 MGAASRGAGG SGGVGDTGDL DALARELVRH GQEAGGSAPP PPGTYQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-33 | 27 | 129 | 10 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-33 | 27 | 129 | 10 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_24671A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004510942.1 | 4e-61 | LOB domain-containing protein 30-like | ||||
Refseq | XP_008776002.1 | 6e-61 | LOB domain-containing protein 18-like | ||||
Swissprot | O81323 | 2e-56 | LBD30_ARATH; LOB domain-containing protein 30 | ||||
TrEMBL | A0A1E5UT08 | 1e-62 | A0A1E5UT08_9POAL; LOB domain-containing protein 18 | ||||
STRING | XP_004510942.1 | 1e-60 | (Cicer arietinum) | ||||
STRING | XP_008776002.1 | 2e-60 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3346 | 37 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00220.1 | 3e-56 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_24671A |
Publications ? help Back to Top | |||
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