PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_24593A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

GRAS

Protein Properties

Length: 835aa MW: 94767.3 Da PI: 7.2861

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_24593A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	367.5	1.8e-112	453	825	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 l++lL++cA+avs+++++la+ +L+++++++s +gd qRla++++ L+arl++++s++y++l +++++ l+ +++ Oropetium_20150105_24593A 453 LRTLLIQCAQAVSANNHTLASDMLKTIRQHSSASGDDSQRLAFCLADCLEARLTGTGSQIYHKLMSKTAN---ARAMLKLYHFC 533 6789**********************************************************999998...88999999999 PP GRAS 85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLa 166 vsP+l h + N++Il+ + g++rvHiiDf+i G+QWp+Ll++La+R+ gpp++RiTg++ p++g +++ +t++rLa Oropetium_20150105_24593A 534 LSVSPYLSTPHYLSNRTILDVTMGKSRVHIIDFGICFGFQWPSLLEQLAKRECGPPMVRITGIEVPQNGfrPNQMNMNTKQRLA 617 *****************************************************************99999999***** PP GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250 ++A+++++pfe++ +++kr+e++++e+L+++++++l+Vn++++++ l de++s++s+r++vL++++ ++Pkv+v+ + +h++ Oropetium_20150105_24593A 618 EYAAKFNIPFEYHGILSKRWETISVEDLNIHKDDVLIVNCIYRMKDLGDETLSVNSARNKVLNTIRMIKPKVFVLGVMNGSHGT 701 ******************************************************************************** PP GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334 + Fl+rf e +++y+alfd+l++++++++e r+++Ere+ ++n++aceg+er+er e+++kW+er ++GF+++pl+ +++ Oropetium_20150105_24593A 702 PFFLTRFKEVVYHYTALFDALDKTISQDNEVRMMLEREIYLATLMNIIACEGSERIERPESYKKWKERNLKVGFEQLPLNPEIM 785 ******************************************************************************** PP GRAS 335 kqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 k+ k ++++++ + y v++++++l+lgWk+r ++++S W+ Oropetium_20150105_24593A 786 KETKDMVKQMYHKDYVVNQDDQWLLLGWKGRIVYAISTWK 825 *******888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	60.118	427	805	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.2E-110	453	825	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 835 aa Download sequence Send to blast
MAVITANSRL ETVSIETVMA SANTKYFFHE PDDLFFLSST AQTNGQLLLA VCRPEAQSKD 60 IKVTLEVFLP VAGYRPYDHQ SPSPCNKLHC DPCTKQRAGD KSNFDYGNFQ STRVNTPGCY 120 ASSKRFTEGT NEFDGLELFL HPLSSVNNYP AVPSSTFNND GHAALSTSSS RKIHDSQVCD 180 ESGNLTRDWN TTNAAENNEH NWFNSQITLN YINNLLMQED SDDKVKLNHG ESALRAMEEP 240 FYRLLGQNDP IYPQLLSPLG SDYLKNIDDC TCKSHLKPCS SNSIAVDSSN NDSNDTLQDF 300 EVPWSLSAIV GERKKFTTGT YRMERYLNVD DLSIAEKYSK GDLSFQVNNR GTSKHASVKL 360 QSQKSYRCRE AFDFLEGRNN KQFAISSDDP IRDEMYDKIL LFYGRNLLDG GIGLQGTMTT 420 KSIIENAQNN QVRTLVQQKK KGQKQLKKEV VDLRTLLIQC AQAVSANNHT LASDMLKTIR 480 QHSSASGDDS QRLAFCLADC LEARLTGTGS QIYHKLMSKT ANARAMLKLY HFCLSVSPYL 540 STPHYLSNRT ILDVTMGKSR VHIIDFGICF GFQWPSLLEQ LAKRECGPPM VRITGIEVPQ 600 NGFRPNQMNM NTKQRLAEYA AKFNIPFEYH GILSKRWETI SVEDLNIHKD DVLIVNCIYR 660 MKDLGDETLS VNSARNKVLN TIRMIKPKVF VLGVMNGSHG TPFFLTRFKE VVYHYTALFD 720 ALDKTISQDN EVRMMLEREI YLATLMNIIA CEGSERIERP ESYKKWKERN LKVGFEQLPL 780 NPEIMKETKD MVKQMYHKDY VVNQDDQWLL LGWKGRIVYA ISTWKPNESN DHGD*

Sequence ? help Back to Top

Protein Sequence Length: 835 aa Download sequence Send to blast

MAVITANSRL ETVSIETVMA SANTKYFFHE PDDLFFLSST AQTNGQLLLA VCRPEAQSKD  60
IKVTLEVFLP VAGYRPYDHQ SPSPCNKLHC DPCTKQRAGD KSNFDYGNFQ STRVNTPGCY  120
ASSKRFTEGT NEFDGLELFL HPLSSVNNYP AVPSSTFNND GHAALSTSSS RKIHDSQVCD  180
ESGNLTRDWN TTNAAENNEH NWFNSQITLN YINNLLMQED SDDKVKLNHG ESALRAMEEP  240
FYRLLGQNDP IYPQLLSPLG SDYLKNIDDC TCKSHLKPCS SNSIAVDSSN NDSNDTLQDF  300
EVPWSLSAIV GERKKFTTGT YRMERYLNVD DLSIAEKYSK GDLSFQVNNR GTSKHASVKL  360
QSQKSYRCRE AFDFLEGRNN KQFAISSDDP IRDEMYDKIL LFYGRNLLDG GIGLQGTMTT  420
KSIIENAQNN QVRTLVQQKK KGQKQLKKEV VDLRTLLIQC AQAVSANNHT LASDMLKTIR  480
QHSSASGDDS QRLAFCLADC LEARLTGTGS QIYHKLMSKT ANARAMLKLY HFCLSVSPYL  540
STPHYLSNRT ILDVTMGKSR VHIIDFGICF GFQWPSLLEQ LAKRECGPPM VRITGIEVPQ  600
NGFRPNQMNM NTKQRLAEYA AKFNIPFEYH GILSKRWETI SVEDLNIHKD DVLIVNCIYR  660
MKDLGDETLS VNSARNKVLN TIRMIKPKVF VLGVMNGSHG TPFFLTRFKE VVYHYTALFD  720
ALDKTISQDN EVRMMLEREI YLATLMNIIA CEGSERIERP ESYKKWKERN LKVGFEQLPL  780
NPEIMKETKD MVKQMYHKDY VVNQDDQWLL LGWKGRIVYA ISTWKPNESN DHGD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	9e-44	459	826	25	380	Protein SCARECROW
5b3h_A	8e-44	459	826	24	379	Protein SCARECROW
5b3h_D	8e-44	459	826	24	379	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_24593A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022685405.1	0.0	scarecrow-like protein 9
TrEMBL	A0A368SHT6	0.0	A0A368SHT6_SETIT; Uncharacterized protein
STRING	Si039877m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11788	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-145	GRAS family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_24593A