PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_24591A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

GRAS

Protein Properties

Length: 639aa MW: 72802.9 Da PI: 7.3392

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_24591A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	326.7	4.5e-100	258	630	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 l++lL++cA+avs+++ +la +L+++++++s +gd qRla++++ L+ rla+s+s++yk l++++ + + l+ ++l Oropetium_20150105_24591A 258 LRTLLMQCAQAVSANNRTLACDILNTIRQHSSASGDDSQRLAFCLADCLEVRLAGSGSRIYKELTSKAFN---ARDMLKLFHLC 338 6789***************************************************************9...899999999 PP GRAS 85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLa 166 v+P+l+ + + N++I + g++r+HiiDf+i G+QWp+L+++La+ + p+++RiTg++ pe g ++ ++tge La Oropetium_20150105_24591A 339 LTVTPFLRAPYYLSNKTIIDISMGKHRIHIIDFGILFGFQWPSLFEELAKGECRPHMVRITGIDLPERGfrPNRVNRNTGELLA 422 *****************************************************************999999999**** PP GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250 ++A+ +++pfe++ ++ ++e++ +e+++++++++l+Vn+ +++ +l de+ s++s+r++vL++++ ++Pkv+v+ + ++++ Oropetium_20150105_24591A 423 RYAKMFNIPFEYQG-ISANWETICVEDFNIQKDDVLIVNCTYRMNNLGDETISISSARNRVLNMIRMMKPKVFVLGIVNGSYST 505 **********.799************************************************************** PP GRAS 251 esFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333 + Fl+rf e +++y+a+fd l++++p ++ e+r+++Ere+ + ++nv+aceg+er+er e ++kW++r +aG++++pl+ ++ Oropetium_20150105_24591A 506 PFFLTRFKEVMYHYAAIFDLLDKTVPLAHnEARMMLEREIYRGILTNVIACEGSERIERPEGYKKWKARNLNAGLEQLPLNPEI 589 **********************888799***9999999********************************** PP GRAS 334 akqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +k k ++++ + + y v+e++++l+lgWk++ ++++S W+ Oropetium_20150105_24591A 590 VKGTKDMVKMLYHKDYVVNEDDQWLLLGWKGKIIYAISTWK 630 ********888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	54.501	232	610	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.6E-97	258	630	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 639 aa Download sequence Send to blast
MDDSQFREFS GNVIRDWNAI NGTENNVPSW FKSDITLSYI NKLLMQEESN DKVTLDHGES 60 ALKAMEEPFC RLLGQNDYLN NLDVTADNSV VIDSSNTNSS DILQVPEAPW TLSAIVGERK 120 MITQSTHRTE FPLNVNDLSI VENHSKGDPS FQVNNRGTRK HASLEFECQG SYPCTEDFSL 180 LDGRSHKQFA ICSDELIRDE TFDKVLLFSR HKNVDEAIVL QETTTTKSAE NSQNNQGKTS 240 ARRKKKGKKQ LKKEVVDLRT LLMQCAQAVS ANNRTLACDI LNTIRQHSSA SGDDSQRLAF 300 CLADCLEVRL AGSGSRIYKE LTSKAFNARD MLKLFHLCLT VTPFLRAPYY LSNKTIIDIS 360 MGKHRIHIID FGILFGFQWP SLFEELAKGE CRPHMVRITG IDLPERGFRP NRVNRNTGEL 420 LARYAKMFNI PFEYQGISAN WETICVEDFN IQKDDVLIVN CTYRMNNLGD ETISISSARN 480 RVLNMIRMMK PKVFVLGIVN GSYSTPFFLT RFKEVMYHYA AIFDLLDKTV PLAHNEARMM 540 LEREIYRGIL TNVIACEGSE RIERPEGYKK WKARNLNAGL EQLPLNPEIV KGTKDMVKML 600 YHKDYVVNED DQWLLLGWKG KIIYAISTWK SNESSGSH*

Sequence ? help Back to Top

Protein Sequence Length: 639 aa Download sequence Send to blast

MDDSQFREFS GNVIRDWNAI NGTENNVPSW FKSDITLSYI NKLLMQEESN DKVTLDHGES  60
ALKAMEEPFC RLLGQNDYLN NLDVTADNSV VIDSSNTNSS DILQVPEAPW TLSAIVGERK  120
MITQSTHRTE FPLNVNDLSI VENHSKGDPS FQVNNRGTRK HASLEFECQG SYPCTEDFSL  180
LDGRSHKQFA ICSDELIRDE TFDKVLLFSR HKNVDEAIVL QETTTTKSAE NSQNNQGKTS  240
ARRKKKGKKQ LKKEVVDLRT LLMQCAQAVS ANNRTLACDI LNTIRQHSSA SGDDSQRLAF  300
CLADCLEVRL AGSGSRIYKE LTSKAFNARD MLKLFHLCLT VTPFLRAPYY LSNKTIIDIS  360
MGKHRIHIID FGILFGFQWP SLFEELAKGE CRPHMVRITG IDLPERGFRP NRVNRNTGEL  420
LARYAKMFNI PFEYQGISAN WETICVEDFN IQKDDVLIVN CTYRMNNLGD ETISISSARN  480
RVLNMIRMMK PKVFVLGIVN GSYSTPFFLT RFKEVMYHYA AIFDLLDKTV PLAHNEARMM  540
LEREIYRGIL TNVIACEGSE RIERPEGYKK WKARNLNAGL EQLPLNPEIV KGTKDMVKML  600
YHKDYVVNED DQWLLLGWKG KIIYAISTWK SNESSGSH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	6e-38	262	630	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	563	571	RPEGYKKWK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_24591A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002466850.1	0.0	scarecrow-like protein 9
TrEMBL	K4ALU3	0.0	K4ALU3_SETIT; Uncharacterized protein
STRING	Si039877m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11788	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-135	GRAS family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_24591A