PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_24589A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | GRAS | ||||||||
Protein Properties | Length: 93aa MW: 10595.5 Da PI: 10.0566 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 46.9 | 4.8e-15 | 2 | 72 | 211 | 281 |
GRAS 211 hrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 ++l de+vs++s+r++vL++++ ++Pk++ + + hn + Fl+rf e +++y+a fd+l++++p+++e+ Oropetium_20150105_24589A 2 KNLGDETVSINSARNRVLNTIRMMKPKIFMHGILNGLHNIPFFLTRFKEVMYHYAAKFDALDKTIPPDNEK 72 67889*************************************************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 9.268 | 1 | 92 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.6E-12 | 2 | 72 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 93 aa Download sequence Send to blast |
MKNLGDETVS INSARNRVLN TIRMMKPKIF MHGILNGLHN IPFFLTRFKE VMYHYAAKFD 60 ALDKTIPPDN EKAPGTIILQ DHLPLTLMAM FH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_24589A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023157117.1 | 2e-34 | scarecrow-like protein 34 | ||||
Swissprot | P0C884 | 7e-20 | SCL34_ARATH; Scarecrow-like protein 34 | ||||
TrEMBL | A0A317Y830 | 3e-33 | A0A317Y830_MAIZE; Scarecrow-like protein 9 | ||||
STRING | GRMZM2G335814_P01 | 6e-34 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29065.1 | 3e-22 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_24589A |