PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_24588A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GRAS
Protein Properties Length: 489aa    MW: 54777.8 Da    PI: 6.3915
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_24588AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1656.3e-512954871195
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                l++lL++cA+avs ++++la  lL ++++++s +gd  qRla++++  L+ rla+ ++++y++l ++  +   + + l+a++l+
  Oropetium_20150105_24588A 295 LRTLLIQCAQAVSVNNHTLACDLLRTVRQHSSASGDDSQRLAFCLADCLEVRLAGIGTQIYHKLLSRVGN---VGNMLKAFQLY 375
                                6789**********************************************************99999888...9********** PP

                       GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLa 166
                                  + P+l++ + + N++Il+   g+ rvHiiDf+i +G+QWp+L+++La+R+ gpp++RiTg++ p +g   ++   +t++rLa
  Oropetium_20150105_24588A 376 LSAIPFLRVPYYLSNKTILDVSMGKPRVHIIDFGIYYGFQWPSLFEQLAKRDCGPPKVRITGIELPPPGfrTNQININTEQRLA 459
                                *****************************************************************9999976666779****** PP

                       GRAS 167 kfAeelgvpfefnvlvakrledleleeLr 195
                                ++A+ +++pfe+++ +++++e+l++e+++
  Oropetium_20150105_24588A 460 EYANMFNIPFEYQA-ISSQWETLNVEDFN 487
                                **************.7********99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.727269488IPR005202Transcription factor GRAS
PfamPF035142.2E-48295487IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MVNTPGGCAS SSNTSIDGTE ESKSSELFLH PSCTFYNDDH ATSRKMYDSQ SSELSGNVTD  60
AINSWFNSDI TLDHINNLLM QEDNDEKVVV HHGESALRAM EEPFHRLLGQ NDPACPPLQT  120
PVSCDYLKNL DDSTSKSLPE PCTTYASAID ASNNNHSNDS LQGSEAPCML SSYIGERKKF  180
TLDRIEWSLV NNRGTSKHAP LEVQSKKKYP CVEDFGLLEG RNNKQFAVSS DEPIRNEIFD  240
KVLLFSRHET IHGNIVSQGT MTIKSTKNLQ SYQGRTTIQR MIIGKKQPKK EMVDLRTLLI  300
QCAQAVSVNN HTLACDLLRT VRQHSSASGD DSQRLAFCLA DCLEVRLAGI GTQIYHKLLS  360
RVGNVGNMLK AFQLYLSAIP FLRVPYYLSN KTILDVSMGK PRVHIIDFGI YYGFQWPSLF  420
EQLAKRDCGP PKVRITGIEL PPPGFRTNQI NINTEQRLAE YANMFNIPFE YQAISSQWET  480
LNVEDFNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-2330148825209Protein SCARECROW
5b3h_A1e-2330148824208Protein SCARECROW
5b3h_D1e-2330148824208Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_24588A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021314676.11e-166scarecrow-like protein 34
RefseqXP_022685405.11e-166scarecrow-like protein 9
TrEMBLA0A368SHT61e-178A0A368SHT6_SETIT; Uncharacterized protein
TrEMBLK4ALU31e-178K4ALU3_SETIT; Uncharacterized protein
STRINGSi039877m1e-179(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-71GRAS family protein