PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_24532A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | MYB | ||||||||
Protein Properties | Length: 451aa MW: 48782.7 Da PI: 6.7161 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.9 | 1.8e-16 | 42 | 89 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed lvd v+++G g+W+++ r+ g+ R++k+c++rw ++l Oropetium_20150105_24532A 42 KGPWTAAEDAMLVDHVRRHGEGNWNAVQRMTGLLRCGKSCRLRWTNHL 89 79******************************99***********996 PP | |||||||
2 | Myb_DNA-binding | 47.7 | 3.6e-15 | 95 | 138 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g +T++E+ ++++++qlG++ W++ a++++ gRt++++k++w++ Oropetium_20150105_24532A 95 KGCFTPDEEVVIAQLHAQLGNK-WARMAAHLP-GRTDNEIKNYWNT 138 789*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.909 | 37 | 89 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.8E-21 | 39 | 92 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.74E-29 | 40 | 136 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-14 | 41 | 91 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-14 | 42 | 89 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.64E-11 | 44 | 89 | No hit | No description |
PROSITE pattern | PS00175 | 0 | 57 | 66 | IPR001345 | Phosphoglycerate/bisphosphoglycerate mutase, active site |
PROSITE profile | PS51294 | 22.276 | 90 | 144 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 93 | 143 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.7E-13 | 94 | 142 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-13 | 95 | 138 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.47E-10 | 98 | 138 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003824 | Molecular Function | catalytic activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 451 aa Download sequence Send to blast |
METNKNSGVA APKSPLDEEE KAAAAAAAAG QQQQHEVMAL KKGPWTAAED AMLVDHVRRH 60 GEGNWNAVQR MTGLLRCGKS CRLRWTNHLR PNLKKGCFTP DEEVVIAQLH AQLGNKWARM 120 AAHLPGRTDN EIKNYWNTRT KRRQRAGLPV YPPEVQLHLV LSKRCRFDEL SPLAPPPQLS 180 SESNTVQLTT MDTAAGGCGY TSARPAPLDL AAQQQQLAMT TTTKHQTVQF LSPPPPPFSA 240 PSSPWARCFA RNAHYFQFAR WSPVSPSTPP DLSLGYQGSR HPPPLSPSPV GPRAELPSNQ 300 FVGQASAAVV TAVGILGGGG SGVGRPVPVP DQPNAASLEK MLQELHEAIK IDQVPAGDEK 360 AVLEQHDHGT AVSEDKPEGE LNKDDIETLF DLMIPPFNAA EHAPPADPAP NHSRSVSQQS 420 SDDHDLPATS PDQEWSLDSA CQWSNVSRIC * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-27 | 40 | 143 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_24532A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT042537 | 1e-140 | BT042537.1 Zea mays full-length cDNA clone ZM_BFb0325G13 mRNA, complete cds. | |||
GenBank | KJ727532 | 1e-140 | KJ727532.1 Zea mays clone pUT5392 MYB transcription factor (MYB129) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982528.1 | 1e-160 | myb-related protein P | ||||
TrEMBL | A0A1E5VV01 | 1e-164 | A0A1E5VV01_9POAL; Transcription factor GAMYB | ||||
STRING | Pavir.Ib03827.1.p | 1e-152 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7420 | 37 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.1 | 2e-66 | myb domain protein 101 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_24532A |