PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_24230A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | NAC | ||||||||
Protein Properties | Length: 251aa MW: 27451.7 Da PI: 10.228 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 109.9 | 2.9e-34 | 17 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppGfrFhPtd elv++yL++k+ +++l++ vi+ v ++ +++PwdLp ++e e yfFs ++r + sg+W Oropetium_20150105_24230A 17 LPPGFRFHPTDVELVMQYLRRKALSRPLPA-AVIPVVhEVARLDPWDLP---GTREGEAYFFSLXXXXXXXXXXRRR-ACSGFW 95 79****************************.88999989**********...3467799******999877666666.578*** PP NAM 84 katgkdkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128 katgk k+v+ + k+ lvg+k+ L+f+ + g++tdWvmheyrl Oropetium_20150105_24230A 96 KATGKAKPVFLQgsgcggKRYLVGVKTALAFH----RGGTRTDWVMHEYRL 142 ***********97777655556**********....56889********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-39 | 15 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 38.681 | 17 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.7E-22 | 18 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MECPVVAARD GQAPRQLPPG FRFHPTDVEL VMQYLRRKAL SRPLPAAVIP VVHEVARLDP 60 WDLPGTREGE AYFFSLXXXX XXXXXXRRRA CSGFWKATGK AKPVFLQGSG CGGKRYLVGV 120 KTALAFHRGG TRTDWVMHEY RLAVPGGVAE QRKQTAHDRV VHPVEWVVCR IFQKNSRRRP 180 NRDTAGETPG IHASSSAGLP GDQLRLLLPS SPQASTTSCV TGVTEVSDQD EVNSGSSIRD 240 APSTASQRDA * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-29 | 9 | 176 | 7 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_24230A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957303.1 | 2e-94 | NAC domain-containing protein 41 | ||||
TrEMBL | K3ZWG0 | 5e-93 | K3ZWG0_SETIT; Uncharacterized protein | ||||
STRING | Si030942m | 9e-94 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12805 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.2 | 2e-41 | NAC domain containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_24230A |