PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_24063A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MIKC_MADS
Protein Properties Length: 270aa    MW: 30120.5 Da    PI: 9.664
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_24063AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.88.2e-30959151
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               krienk+ rqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+g+l+e+s+
  Oropetium_20150105_24063A  9 KRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGRLFEFST 59
                               79***********************************************96 PP
2K-box94.91.3e-318517213100
                      K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                                 + + +qe+ kLk ++e Lq++qR+llGedL++Ls keL+qLe+q+e slk+iRs K++ +l+q+ el++ke++lq++nk+Lrk
  Oropetium_20150105_24063A  85 AELNNYQEYLKLKTRVEFLQTTQRNLLGEDLGPLSTKELEQLENQIEISLKHIRSAKSQQMLDQLFELKRKEQQLQDANKDLRK 168
                                445789****************************************************************************** PP

                      K-box  97 klee 100
                                k++e
  Oropetium_20150105_24063A 169 KIQE 172
                                **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.207161IPR002100Transcription factor, MADS-box
CDDcd002651.51E-42278No hitNo description
SuperFamilySSF554551.2E-32288IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-31323IPR002100Transcription factor, MADS-box
PfamPF003191.8E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-313859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129715.52186176IPR002487Transcription factor, K-box
PfamPF014861.4E-2688171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGRGKVELKR IENKISRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSS RGRLFEFSTS  60
SCMYKTLERY RSCNYSSEAS APLEAELNNY QEYLKLKTRV EFLQTTQRNL LGEDLGPLST  120
KELEQLENQI EISLKHIRSA KSQQMLDQLF ELKRKEQQLQ DANKDLRKKI QETGGENLLL  180
TRQDVGPSSH VDEAIQELHL GVCDPSLHIG KLKDEAAAGS GVARIQIQVV ARARSSAARS  240
AGEATGKTAV AAPKRVLLDS RLVSIVAYQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A1e-258317014101Developmental protein SEPALLATA 3
4ox0_B1e-258317014101Developmental protein SEPALLATA 3
4ox0_C1e-258317014101Developmental protein SEPALLATA 3
4ox0_D1e-258317014101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor. May be involved in the control of flowering time. {ECO:0000269|PubMed:16217607, ECO:0000269|PubMed:9085264, ECO:0000269|Ref.8}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_24063A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6616000.0JN661600.1 Eleusine coracana MADS5-like protein (OSM5) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964768.11e-128MADS-box transcription factor 5
SwissprotA2Y9P01e-127MADS5_ORYSI; MADS-box transcription factor 5
SwissprotQ0DEB81e-127MADS5_ORYSJ; MADS-box transcription factor 5
TrEMBLK3XZ681e-127K3XZ68_SETIT; Uncharacterized protein
STRINGSi007226m1e-128(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22213264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.13e-76MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cui R, et al.
    Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa).
    Plant J., 2010. 61(5): p. 767-81
    [PMID:20003164]