PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_24042A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 349aa    MW: 38594.4 Da    PI: 8.6788
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_24042AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.18.1e-0796119123
                                EEETTTTEEESSHHHHHHHHHH.T CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                y+C  Cg++F+++ +L+rH r  H
  Oropetium_20150105_24042A  96 YSCAVCGRRFPTRPDLTRHFRQlH 119
                                99*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.16E-594122No hitNo description
Gene3DG3DSA:3.30.160.608.5E-595122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.9E-496119IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.25696124IPR007087Zinc finger, C2H2
PROSITE patternPS00028098119IPR007087Zinc finger, C2H2
CDDcd061674.88E-11114246No hitNo description
Gene3DG3DSA:3.40.50.10103.9E-5126235IPR029060PIN domain-like
PfamPF019361.2E-4169236IPR021139NYN domain, limkain-b1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGGRGLGWPA ACGQPRGATS RCRCGDAGLP PRGPPFPAAT SLIAAASILG RIVSISAFAN  60
RHAFSHLPAW VSAERRDRRA LDRAERAGVV TPPVPYSCAV CGRRFPTRPD LTRHFRQLHE  120
RERNKKLNRM RSLKGKKRQK FRERYISGNT KYNDAARELL TPKVGYGLAS ELRRAGVDVR  180
TVPDKPQAAD QALKRQVKHS VACGVDWLVL ISDDSDFTDT VRKARDADLR TVVVGDGCRA  240
LGNVADIWLX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXQFIVEWDT SDLDGVIDDI  300
IGTRTSLLGA TTMSAFTDAE ITDGIFEVGL NADDMFWSSD DEDEDGYL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_24042A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641376.21e-170uncharacterized protein LOC4340243
TrEMBLA0A0A9SNC71e-173A0A0A9SNC7_ARUDO; Uncharacterized protein
STRINGOPUNC06G04230.11e-171(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98063234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-94C2H2-like zinc finger protein