PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_23984A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

LBD

Protein Properties

Length: 359aa MW: 38129.7 Da PI: 7.377

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_23984A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	41.9	2.9e-13	100	173	28	101
DUF260 28 kkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 f++v+++FG+s v++l++++ ++ed+++++ yeA a+ P +Ga+gv+++ +l+++ +el+++k+e+ Oropetium_20150105_23984A 100 XXFKAVRRIFGVSAVCRLMRKVGWRRHEDLIRTVKYEATAWELYPASGAMGVVRDHVARLRSAYVELVSVKHEI 173 579*****************************************************************999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.466	42	173	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-10	100	170	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MADDGAPKTC SFDTLPTPEA TRTPAARPAA ADEATPTPHA SSVVEASPSA TSSSPPAAEE 60 ATTWSLXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XFKAVRRIFG VSAVCRLMRK 120 VGWRRHEDLI RTVKYEATAW ELYPASGAMG VVRDHVARLR SAYVELVSVK HEIQELVAAC 180 RGSDGPQQHT GEPLDDAAMP HAAAAATQND CIHPATRLPS AAGQHQTTAA QGAAVAHQLA 240 ASGSGGRQRT ELNLTMQQNA AAAATQSQYD PHGDGHPSQC QKTVNGARKR KQDFQNAADA 300 PASNSAVEEL AAAPLGSAHA GASVFQPQQP PPSPPQLGTA PRYRQELPSL PPSPWRTQ*

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MADDGAPKTC SFDTLPTPEA TRTPAARPAA ADEATPTPHA SSVVEASPSA TSSSPPAAEE  60
ATTWSLXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XFKAVRRIFG VSAVCRLMRK  120
VGWRRHEDLI RTVKYEATAW ELYPASGAMG VVRDHVARLR SAYVELVSVK HEIQELVAAC  180
RGSDGPQQHT GEPLDDAAMP HAAAAATQND CIHPATRLPS AAGQHQTTAA QGAAVAHQLA  240
ASGSGGRQRT ELNLTMQQNA AAAATQSQYD PHGDGHPSQC QKTVNGARKR KQDFQNAADA  300
PASNSAVEEL AAAPLGSAHA GASVFQPQQP PPSPPQLGTA PRYRQELPSL PPSPWRTQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_23984A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_23984A