PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_23884A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | Nin-like | ||||||||
Protein Properties | Length: 115aa MW: 13150.3 Da PI: 10.2982 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 67.9 | 1.5e-21 | 1 | 37 | 16 | 52 |
RWP-RK 16 lpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +pi++AA e++v+lTvLK++CR++G++RWPhRk+ksl Oropetium_20150105_23884A 1 MPITQAAHEMNVGLTVLKKRCRELGVARWPHRKMKSL 37 79*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02042 | 1.3E-16 | 1 | 37 | IPR003035 | RWP-RK domain |
PROSITE profile | PS51519 | 15.289 | 1 | 58 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MPITQAAHEM NVGLTVLKKR CRELGVARWP HRKMKSLRSL ILNVQEMGKG LAPAAVQREL 60 EAYCALMEED PSIELTDRTK KLRQACFKEN YKRRRAATVR NVVDHVYNDF SHVS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_23884A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167086.1 | 2e-58 | protein RKD4-like | ||||
Swissprot | Q9LVU8 | 1e-32 | RKD4_ARATH; Protein RKD4 | ||||
TrEMBL | F5CJE3 | 4e-57 | F5CJE3_WHEAT; RWP-RK domain containing protein | ||||
TrEMBL | R7W9U0 | 3e-57 | R7W9U0_AEGTA; Uncharacterized protein | ||||
STRING | EMT18851 | 4e-58 | (Aegilops tauschii) | ||||
STRING | Pavir.Ea01492.1.p | 3e-58 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12888 | 23 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 4e-35 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_23884A |
Publications ? help Back to Top | |||
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