PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_23736A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family AP2
Protein Properties Length: 432aa    MW: 47383.6 Da    PI: 7.0121
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_23736AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.22e-13110161154
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAak...aaiaarkkle 54 
                                s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+   a+++a+ k++
  Oropetium_20150105_23736A 110 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARfraAYDRAAIKFR 161
                                78*******************......55**********9988863336777776666 PP
2AP243.58.2e-14205255155
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a+++++g
  Oropetium_20150105_23736A 205 SKYRGVTLHK-CGRWEAR---M---GqllGKKYVYLGLFDSEIEAARAYDRAALRFNG 255
                                89********.7******...5...334336**********99***********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-5110162IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-12110170IPR016177DNA-binding domain
PROSITE profilePS5103214.091111170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-13111170IPR001471AP2/ERF domain
SMARTSM003801.4E-27111176IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-17205264IPR016177DNA-binding domain
CDDcd000181.35E-25205265No hitNo description
PfamPF008471.2E-9205255IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-16206263IPR001471AP2/ERF domain
PROSITE profilePS5103216.489206263IPR001471AP2/ERF domain
SMARTSM003801.7E-32206269IPR001471AP2/ERF domain
PRINTSPR003671.8E-6207218IPR001471AP2/ERF domain
PRINTSPR003671.8E-6245265IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MVLDLNVESP ADSGTSSSSV LNSGDGGFRF GLLGNPDDED CSGELAAPVG ASSGFMTRQL  60
FPVPSPPAEP ETAAAPVPVW QPRRSEDLSV AQRPVVAAKK TRRGPRSRSS QYRGVTFYRR  120
TGRWESHIWD CGKQVYLGGF DTAHAAARFR AAYDRAAIKF RGLEADINFT LGDYEEDLKQ  180
MRNWTKEEFV HILRRQSTGF ARGSSKYRGV TLHKCGRWEA RMGQLLGKKY VYLGLFDSEI  240
EAARAYDRAA LRFNGREAVT NFEPSSYNGG DAPPDTENEG IVDGDAVDLD LRISQPNVHD  300
SKRDNPVSGL QLTCDSPESS SAMASQPINS SSPWAVYQQS TAVPPHHQRL YSSAYPGFFP  360
NLQERPMERR PELGTQSFPN WGWQMQGSPH VPSLNSAASS GFSTAVGGVP FPSHPPPAPF  420
PDRQFYFPPT A*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_23736A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792819.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotQ84TB50.0AP22_ORYSJ; APETALA2-like protein 2
TrEMBLA0A2T7BZ330.0A0A2T7BZ33_9POAL; Uncharacterized protein
STRINGPavir.J23520.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.35e-91related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]