PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_23698A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GRAS
Protein Properties Length: 765aa    MW: 85008.7 Da    PI: 6.8699
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_23698AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS346.35.2e-1063957472356
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                ++lL++cA+a + +d++  ++lL+++++++s +gd+ qRla++f+ +L+arla+++s++y++l+++++s   +s+ l+a++l++
  Oropetium_20150105_23698A 395 TTLLVHCAQAAAIDDHRSSTELLKQIRKHSSAEGDAGQRLAHCFADGLEARLAGTGSSVYRSLAAKRNS---TSDILKAFSLYV 475
                                689**********************************************************99999888...89********** PP

                       GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLak 167
                                 ++P+ k+s+ +aN +Il+a +g+ r+HiiD++i +G+QWp L+q L++Rp+gppslRiTg++ p++g   +e++e+tg+rL++
  Oropetium_20150105_23698A 476 TACPFKKISYYVANTTILNASKGAARLHIIDYGIRYGFQWPVLIQRLSNRPGGPPSLRITGIDFPQPGfrPAERIEATGRRLHE 559
                                *******************************************************************9**************** PP

                       GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251
                                +A+ l+vpfe+n+ +a +++++++e+L++k++E l+Vn+ +++ +++de+v+ +s+r++vL+++ +++P+++++   +  +n++
  Oropetium_20150105_23698A 560 YARMLNVPFEYNA-IAAKWDTIQTEDLKIKSDELLVVNCLYRMRNMMDETVTDDSPRTRVLNTISKMKPNLFIHGIVNGTYNAP 642
                                *************.799******************************************************************* PP

                       GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                                 F++rf eal ++s+lfd+le++++r++e r  +Er ++gre+ nv+aceg+er+er et+++W+ r  +aG++++pl+e+++k
  Oropetium_20150105_23698A 643 FFVTRFKEALFHFSSLFDMLEVNASRTDELRLLIERDFFGREALNVIACEGTERIERPETYKQWQLRNLRAGLRQLPLNEEMMK 726
                                ************************************************************************************ PP

                       GRAS 336 qaklllrkvksdgyrveeesg 356
                                 a+++++k + + + v+e+++
  Oropetium_20150105_23698A 727 RARYMVNKSYHRDFLVDEDNN 747
                                **********999****9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.28368745IPR005202Transcription factor GRAS
PfamPF035141.8E-103395747IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 765 aa     Download sequence    Send to blast
MGAADLGLLP PFPQSRSLSS AEVPSHARAR GVALRRRPAH HIDDLQAAAT VAVATTLAHP  60
PHALLLDSRV IDLAIELGFF AGSVYEESVV FQRRKRYYRI GEICTSDKVE SANLLDMKLP  120
GMVMDSGSRY NGDLYSTPSQ PAPPHMINFS LHHQQSPAQF FPSYELHNNR PADSNPCPPP  180
ATPSPASTTT TTEPDNSEDS SEAAADDAVL AYINQFLLED EDEEFCPVTD ASVQDSALLA  240
VEKPFVDILT AAKSTQANDA KSWVTGDSDS SGSRGTHNNV ATSNDSISYG LPYESVKEAA  300
KCADHNKGSR KKPHDNTDLD SEERMSKQSA LCDVETAREM FDKVLLCTDK NCLFHTPLPA  360
DAHISGGYVK GSGNKRGRRR GKSRVDPEEE AVDLTTLLVH CAQAAAIDDH RSSTELLKQI  420
RKHSSAEGDA GQRLAHCFAD GLEARLAGTG SSVYRSLAAK RNSTSDILKA FSLYVTACPF  480
KKISYYVANT TILNASKGAA RLHIIDYGIR YGFQWPVLIQ RLSNRPGGPP SLRITGIDFP  540
QPGFRPAERI EATGRRLHEY ARMLNVPFEY NAIAAKWDTI QTEDLKIKSD ELLVVNCLYR  600
MRNMMDETVT DDSPRTRVLN TISKMKPNLF IHGIVNGTYN APFFVTRFKE ALFHFSSLFD  660
MLEVNASRTD ELRLLIERDF FGREALNVIA CEGTERIERP ETYKQWQLRN LRAGLRQLPL  720
NEEMMKRARY MVNKSYHRDF LVDEDNNNKI GSRQLINVPH SKNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-463987218329GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_23698A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793343.10.0scarecrow-like protein 9
RefseqXP_025793344.10.0scarecrow-like protein 9
RefseqXP_025793345.10.0scarecrow-like protein 9
RefseqXP_025793346.10.0scarecrow-like protein 9
SwissprotQ9XE581e-156SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A0A9TYC80.0A0A0A9TYC8_ARUDO; Uncharacterized protein
STRINGSi034627m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138412529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-156GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]