PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_23584A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB_related
Protein Properties Length: 90aa    MW: 9894.65 Da    PI: 9.1417
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_23584AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding284.9e-09350347
                               SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                               +W+  E e++ +a + +  +   +W ++a  +g g+t  +++ ++ ++
  Oropetium_20150105_23584A  3 SWSRSENERFENALATYDRDtpdRWQRVADAVGGGKTVDDVRRHYADL 50
                               7*****************99*************************877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0016153IPR001005SANT/Myb domain
PROSITE profilePS5129311.881155IPR017884SANT domain
Gene3DG3DSA:1.10.10.604.3E-4248IPR009057Homeodomain-like
SuperFamilySSF466892.03E-10250IPR009057Homeodomain-like
PfamPF002494.5E-7350IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MSSWSRSENE RFENALATYD RDTPDRWQRV ADAVGGGKTV DDVRRHYADL RVDIRGIIED  60
GRRRRQAAAA PAPGGNNSNG ANNNQQPQA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_23584A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008660333.19e-22protein RADIALIS-like 3
SwissprotQ1A1731e-16RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A3B6LYN18e-23A0A3B6LYN1_WHEAT; Uncharacterized protein
TrEMBLA0A446UYB08e-23A0A446UYB0_TRITD; Uncharacterized protein
STRINGTraes_5BL_9C1318B2F.11e-23(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.12e-17RAD-like 6