PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_23465A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | bHLH | ||||||||
Protein Properties | Length: 203aa MW: 21437.7 Da PI: 10.4186 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.8 | 3.1e-11 | 111 | 159 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r++ + ++RR+riN+++ L+el+P+ +K++ +++L kA+ Y+k +q Oropetium_20150105_23465A 111 RKSPTTAAKNRRERINERLKVLQELVPNG-----RKVDTVTMLDKAITYVKFMQ 159 55666788*******************96.....6****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.301 | 109 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.55E-15 | 111 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.13E-13 | 111 | 163 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.4E-13 | 111 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-8 | 113 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.4E-13 | 115 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MALVSELAAA TLCFDDGSIV VVDPKAPLPV VNGSSAASNV FAIEGGGNAG AGAMPPPPST 60 NKKRRSLAHV PRQHDGAVED DDTKATKKHC GGKTTKAAKR AMEPIATPPP RKSPTTAAKN 120 RRERINERLK VLQELVPNGR KVDTVTMLDK AITYVKFMQL QLKVLQTDAF WPTQGGKAPE 180 MSQVKEALQA ILLSASSSSR CA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_23465A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158740.1 | 3e-46 | transcription factor bHLH69-like | ||||
Swissprot | Q9FJ00 | 7e-39 | BH086_ARATH; Putative transcription factor bHLH086 | ||||
TrEMBL | A0A1E5UPT3 | 5e-46 | A0A1E5UPT3_9POAL; Transcription factor bHLH83 | ||||
STRING | EMT09799 | 1e-45 | (Aegilops tauschii) | ||||
STRING | Traes_7DS_4053B6E88.1 | 1e-45 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1412 | 38 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37800.1 | 7e-38 | RHD SIX-LIKE 1 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_23465A |
Publications ? help Back to Top | |||
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