PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_23429A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | HB-other | ||||||||
Protein Properties | Length: 214aa MW: 23925.2 Da PI: 9.7128 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 17.2 | 8.5e-06 | 49 | 74 | 37 | 51 |
C...........TS-HHHHHHHHHHH CS Homeobox 37 l...........gLterqVkvWFqNr 51 ++ +qV++WFqN+ Oropetium_20150105_23429A 49 FtasragvagrvVIKPKQVRTWFQNH 74 5555555555449************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00027 | 0 | 56 | 79 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MEGRRVDSTA PISFHFLPAE VAEMEEIVRQ LIDSIYPRRH VIYELAGKFT ASRAGVAGRV 60 VIKPKQVRTW FQNHYYGPRR KEAMETRRFA ANKHQASSSS VAPRAQARTI SGSKRMAKGQ 120 FVGGKMLTGA YEHNEELPFN SDALVHAIDR RRHGYSESSC KFLVRYEHDG TEEIVPLSKL 180 RPKVVYTHGL PEGSGVATRC TEAAPVIIEV DDD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_23429A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.1 | 7e-09 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_23429A |