PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_23290A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family LSD
Protein Properties Length: 136aa    MW: 14810 Da    PI: 9.2504
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_23290AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD128.91.9e-093457124
                    zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
                               C+gC t+L Y rGA+++RC++C t
  Oropetium_20150105_23290A 34 CNGCPTILVYNRGASNIRCPNCRT 57
                               **********************98 PP

2zf-LSD123.21.1e-077397125
                    zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                               Cg C t+L Y +GA+ V Ca C +V
  Oropetium_20150105_23290A 73 CGRCTTTLKYQLGASTVECARCRHV 97
                               ************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.8E-93259IPR005735Zinc finger, LSD1-type
PfamPF069434.3E-93457IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010537.3E-67099IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-77397IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MSKQVPITGM PEQLYCNTFT SVNPSAREMS ELVCNGCPTI LVYNRGASNI RCPNCRTLNS  60
TRSGANQFGQ LQCGRCTTTL KYQLGASTVE CARCRHVNPV RDARPQTVLV ENPKTLDDKG  120
KLVSNVAVGV TSWKR*
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_23290A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021320000.12e-58protein LOL4 isoform X3
RefseqXP_021320001.12e-58protein LOL4 isoform X3
SwissprotQ84UR03e-59LOL4_ORYSJ; Protein LOL4
TrEMBLA0A0E0LQX35e-57A0A0E0LQX3_ORYPU; Uncharacterized protein
STRINGOPUNC08G01880.19e-58(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123332938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.74e-26LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]