PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_23267A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 358aa    MW: 38068 Da    PI: 4.6697
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_23267AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM22.23.7e-075711959128
                        NAM  59 yfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                +f++ ++ k     rk   + +g+Wk++ +  +vl+ +ge+v   + +  y  ++ kg +  Wvmhey++
  Oropetium_20150105_23267A  57 FFYAYKKGK----ARKCLGAGAGTWKSQRNPSHVLVVDGENVKWNRHMFNY--DEGKG-SLGWVMHEYSI 119
                                444444333....356667889************99988888777777777..33333.468******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF517359.05E-51050IPR016040NAD(P)-binding domain
Gene3DG3DSA:3.40.50.7205.0E-51148IPR016040NAD(P)-binding domain
PfamPF023651.5E-453119IPR003441NAC domain
SuperFamilySSF1019415.49E-956126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MEAAPARTTT ATVCVTGAGG FLASWLVKLL FSGGRRYAVR DAARDTVSLE GKAPVAFFYA  60
YKKGKARKCL GAGAGTWKSQ RNPSHVLVVD GENVKWNRHM FNYDEGKGSL GWVMHEYSIA  120
SSPEHKILRI SFTGHGKMRT RDPDADGGIE PATKRPRHLD PAAAEESAGS GSGCNTTTAA  180
TQASADDDLD PSLLNISDEV MALAMDLLHS LPDLGSEEEA PLFTVPTDGA RTTTQQQTTV  240
DQDLVVPHDV DYDHFHADGG EFATTSLIIT PAAAESAASS GCTTAAAHYF TDPSFFWDDT  300
TEVTGQTIDG ASTTTTTEQQ RVVSQDVAPP HVESSSAATT GPQNFLTWEG FDYVLTV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_23267A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP8717946