PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_23154A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 631aa    MW: 70179.9 Da    PI: 4.5537
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_23154AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.42.3e-5291421128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                                lp GfrFhPtdeelv +yLk k++g+ +++ evi+e+d++k+ePwdLp k  +++++ ew+fF+++d+ky++g+r+nrat++gy
  Oropetium_20150105_23154A   9 LPLGFRFHPTDEELVRHYLKGKITGQINSEVEVIPEIDVCKCEPWDLPdKsLIRSDDPEWFFFAPKDRKYPNGSRSNRATEAGY 92 
                                699************************9999****************96446677888************************** PP

                        NAM  83 Wkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                Wkatgkd+ ++sk    k++ +g+kktLvf+kgrapkge+t W+mheyr 
  Oropetium_20150105_23154A  93 WKATGKDRVIKSKgdkrKQHIIGMKKTLVFHKGRAPKGERTGWIMHEYRT 142
                                ************987666666***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.28E-583163IPR003441NAC domain
PROSITE profilePS5100556.9029163IPR003441NAC domain
PfamPF023651.1E-2710141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MTVMELKALP LGFRFHPTDE ELVRHYLKGK ITGQINSEVE VIPEIDVCKC EPWDLPDKSL  60
IRSDDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR VIKSKGDKRK QHIIGMKKTL  120
VFHKGRAPKG ERTGWIMHEY RTTEPEFECG EQGGYVLYRL FRKQEEKNER SSPEEMDRSG  180
YSPTPSRSSP DNADANVDAL TPLNKESPES TLHDSPINLP NSVEEPNTAP MTRWLADRTN  240
SLAAVNVSQL PPNGHIERVV KQVDPSAGEL AQLTDSQKLH SDPNQFASGN DGILPHEGNG  300
LFTDFQGIMS FDGNMNGPDA LDVFLNQALT DPDEHSSTTS KIQYDSDPGL MLPEFENHGT  360
MQGELQDDLS FWAEFSFGPE EPNPQLSGLY ENTPLLPYDI TDQDVLSMDS GAESLHDLFN  420
NMEDLSGKRD GWGTEPAIQG TGINLMPRQL QPKKGVPSDE DDVESTGITI KSRCPGPTSS  480
TASSFIQQGT ARRRLRLQSD LKMGPCSATD DASSCTIDES EGKHNLGNSE IEEDAGTNFA  540
ECVDLSGSSH DDEQKNMPEY DAQKAVPETE SVPRLRKTSE ARDKITEQED GLDLFVRAPR  600
QKRGFQSRVI WLVLPVALLL LLYVGVYGWV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-46816416166NO APICAL MERISTEM PROTEIN
1ut4_B8e-46816416166NO APICAL MERISTEM PROTEIN
1ut7_A8e-46816416166NO APICAL MERISTEM PROTEIN
1ut7_B8e-46816416166NO APICAL MERISTEM PROTEIN
3swm_A8e-46816419169NAC domain-containing protein 19
3swm_B8e-46816419169NAC domain-containing protein 19
3swm_C8e-46816419169NAC domain-containing protein 19
3swm_D8e-46816419169NAC domain-containing protein 19
3swp_A8e-46816419169NAC domain-containing protein 19
3swp_B8e-46816419169NAC domain-containing protein 19
3swp_C8e-46816419169NAC domain-containing protein 19
3swp_D8e-46816419169NAC domain-containing protein 19
4dul_A8e-46816416166NAC domain-containing protein 19
4dul_B8e-46816416166NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_23154A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972796.10.0protein NTM1-like 9
TrEMBLK3YGK10.0K3YGK1_SETIT; Uncharacterized protein
STRINGSi013369m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51723859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.11e-71NAC 014