PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_23150A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | B3 | ||||||||
Protein Properties | Length: 241aa MW: 26566.1 Da PI: 5.8604 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 87.1 | 1.5e-27 | 48 | 138 | 1 | 92 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+kvltpsdv+k++rlv+pk++ae++ + +++++l +ed+ g W+++++y+++s++yv+tkGW++Fv+a L +gD+v F+ Oropetium_20150105_23150A 48 FDKVLTPSDVGKLNRLVVPKQHAERFfPVDAATGTQLCFEDRGGAPWRFRYSYWGSSQSYVMTKGWSSFVRAASLAAGDTVSFY 131 89************************9666778899************************************************ PP E-SSSEE.. CS B3 84 ldgrsefel 92 + ++++ Oropetium_20150105_23150A 132 R--GAGGRY 138 3..355555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.7E-37 | 40 | 137 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.81E-28 | 44 | 139 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.23E-25 | 46 | 140 | No hit | No description |
Pfam | PF02362 | 2.9E-25 | 48 | 136 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.4E-20 | 48 | 146 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.719 | 48 | 146 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MDLSLSTLVE AARQVQEEHR VAVGQDRRRA GGGGGQQGDA VEEREHMFDK VLTPSDVGKL 60 NRLVVPKQHA ERFFPVDAAT GTQLCFEDRG GAPWRFRYSY WGSSQSYVMT KGWSSFVRAA 120 SLAAGDTVSF YRGAGGRYFI DYRHCERRRR EISFAPAVSE WPFLDRMQRS RSRTTGGEAG 180 ASTTTNAAGT VPVAAAHHHH DAEVGPSGTK SFRLFGFNVE CTNDDDDAAM AEEEYDDDDN 240 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 8e-45 | 41 | 143 | 1 | 111 | B3 domain-containing transcription factor NGA1 |
5os9_B | 8e-45 | 41 | 143 | 1 | 111 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 145 | 150 | ERRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_23150A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004698 | 1e-104 | AP004698.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0498E12. | |||
GenBank | AP014964 | 1e-104 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 1e-104 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008664024.2 | 5e-85 | putative B3 domain-containing protein Os08g0157700 | ||||
Swissprot | Q7EZD5 | 8e-74 | Y8577_ORYSJ; Putative B3 domain-containing protein Os08g0157700 | ||||
TrEMBL | A0A1E5WI63 | 2e-85 | A0A1E5WI63_9POAL; Putative B3 domain-containing protein | ||||
STRING | GRMZM2G180168_P01 | 2e-84 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14164 | 24 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01500.1 | 1e-46 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_23150A |