PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_22989A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

CPP

Protein Properties

Length: 472aa MW: 50862.7 Da PI: 8.4231

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_22989A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	34.5	4.1e-11	182	208	14	40
TCR 14 lkkYCeCfaagkkCseeCkCedCkNke 40 +k YCeCfaag++Cse C+C++C Nk Oropetium_20150105_22989A 182 KKSYCECFAAGVYCSEPCSCQGCLNKP 208 599**********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	1.3E-4	174	210	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	11.724	175	252	IPR005172	CRC domain
Pfam	PF03638	1.5E-7	183	207	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
MSREDSPLFS FINNLSPIEP VKSAYQSINI TSISSIFTSP HDNGETQQQR GIRRRCLFFE 60 ASGFSNGIQK ETVEDMSIQC KGKTPVETKI NQSKIQSRLP RGIGLHLNAL AATPKGKIVC 120 QDATGSALIP VSTSEHDMNG NLLSAGENFT HSGGELLELP MDDSEGFPVN DHVSSQSGSP 180 QKKSYCECFA AGVYCSEPCS CQGCLNKPIH EEIVLSTRKQ IEFRNPLAFA PKVIRMSDTG 240 PETGSFPMNC RKIPTILLLQ LVIREDVIAR SQAVSRNTVL QVAPKTYLEM KLSDIVADPC 300 YLWEVSDARA TADVRVAKTL LVEEMLDNSL LLKPPTFSSA KPPRPSKPRS SSSRSSASKA 360 TGTVQSRKIS KITDSGRNEE MPHVLTEDNS PSNGVKTTSP NGKRVSPPHN ALSISPNRKG 420 GRKLILKSIP SFPSLLGDAN CSSAMDSTDS KLSTPPLALD PSPVNPGPSQ G*

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

MSREDSPLFS FINNLSPIEP VKSAYQSINI TSISSIFTSP HDNGETQQQR GIRRRCLFFE  60
ASGFSNGIQK ETVEDMSIQC KGKTPVETKI NQSKIQSRLP RGIGLHLNAL AATPKGKIVC  120
QDATGSALIP VSTSEHDMNG NLLSAGENFT HSGGELLELP MDDSEGFPVN DHVSSQSGSP  180
QKKSYCECFA AGVYCSEPCS CQGCLNKPIH EEIVLSTRKQ IEFRNPLAFA PKVIRMSDTG  240
PETGSFPMNC RKIPTILLLQ LVIREDVIAR SQAVSRNTVL QVAPKTYLEM KLSDIVADPC  300
YLWEVSDARA TADVRVAKTL LVEEMLDNSL LLKPPTFSSA KPPRPSKPRS SSSRSSASKA  360
TGTVQSRKIS KITDSGRNEE MPHVLTEDNS PSNGVKTTSP NGKRVSPPHN ALSISPNRKG  420
GRKLILKSIP SFPSLLGDAN CSSAMDSTDS KLSTPPLALD PSPVNPGPSQ G*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_22989A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002459413.1	1e-155	protein tesmin/TSO1-like CXC 3
TrEMBL	A0A1W0W2A9	1e-154	A0A1W0W2A9_SORBI; Uncharacterized protein
STRING	Sb02g004250.1	1e-155	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6147	34	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	7e-31	TESMIN/TSO1-like CXC 2

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_22989A