PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_22978A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 466aa    MW: 50566.6 Da    PI: 6.9276
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_22978AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.27.1e-14253298555
                                HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                h + Er+RR+++N++f+ L+++lP+ a      K +K +iL +A eYIksL+
  Oropetium_20150105_22978A 253 HMISERKRREKLNDSFHALKTVLPPgA------KKDKTSILIRAREYIKSLE 298
                                8899********************966......99999************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.761248297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-16249318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.82E-13250300No hitNo description
Gene3DG3DSA:4.10.280.102.3E-15252316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-11253298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-12254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146866.10E-4289320No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MDSSWFHAYA TATNTAAAGN NGFMCGYAAS CTPAEFHHKE EEDEQLISSQ IQDHLNQISM  60
HMNIMDDDEV VYDDGALDIQ QHPMPTVDGL FDPHHASSFL PSSSSSASSL SLRSASLSCS  120
PESSAQVFGG ELAATAGGRY HEVSSHVPLP PAVPYTNVHV ATITTPVTMT ARESKTGGGG  180
AFKRFARHLG PWRPQPKPGA CGQRMFKTAL SVLSKMHAAA SARYNHQQQY YYQHQASAEA  240
AVAQPPSVNQ LQHMISERKR REKLNDSFHA LKTVLPPGAK KDKTSILIRA REYIKSLEAK  300
ASELEEKNRS LESRLLAQRR ISDDFGGARK HCGGGNEHPT AGEKEAAAAA KEESSFWAAA  360
PTVEPHDLCT LKIAVRSSSR CNNNMTDVVL RTLQCLREQA GEEGDVNLVS MDTIASGGGG  420
PPHHHENSSP RAAAVLTMQI KFCIFIITSV DQIDQCWLSR CLLAY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256261ERKRRE
2257262RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_22978A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817328.11e-115putative transcription factor bHLH041
TrEMBLA0A3L6R5J51e-115A0A3L6R5J5_PANMI; Uncharacterized protein
STRINGSi001328m1e-111(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.17e-27bHLH family protein