PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_22887A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | MYB_related | ||||||||
Protein Properties | Length: 188aa MW: 20091.4 Da PI: 9.7923 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.1 | 2.1e-18 | 14 | 72 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT............-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg............tWktIartmgkgRtlkqcksrwqkyl 48 +grWT+eEde l ++++++G g +W++Ia +++ gRt++++k++w+++l Oropetium_20150105_22887A 14 KGRWTKEEDETLTRYIQEHGEGlwrtlpknagllRWSLIAGHLP-GRTDNEIKNYWNSHL 72 79******************************************.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.33E-15 | 3 | 77 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 5 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.197 | 9 | 76 | IPR017930 | Myb domain |
SMART | SM00717 | 4.4E-16 | 13 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.3E-16 | 14 | 72 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.34E-14 | 16 | 72 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MGRAPCCEKV GLKKGRWTKE EDETLTRYIQ EHGEGLWRTL PKNAGLLRWS LIAGHLPGRT 60 DNEIKNYWNS HLSRRASDFR GGSDGVVVNV DLSKLPGGGK RRGGRTSRGG AAAAGKGGNV 120 KKGNGKGKAK EKVMDVAPPR KAKGEQEQMD TNGPTPSSQQ CGEEEHASAS GVTSDGLEDG 180 PLGLNEEM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_22887A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF521880 | 1e-41 | AF521880.1 Zea mays R2R3 Myb transcription factor MYB-IF35 mRNA, complete cds. | |||
GenBank | BT039901 | 1e-41 | BT039901.1 Zea mays full-length cDNA clone ZM_BFc0050D21 mRNA, complete cds. | |||
GenBank | BT063308 | 1e-41 | BT063308.1 Zea mays full-length cDNA clone ZM_BFc0051B20 mRNA, complete cds. | |||
GenBank | BT088200 | 1e-41 | BT088200.1 Zea mays full-length cDNA clone ZM_BFc0061H17 mRNA, complete cds. | |||
GenBank | HQ858721 | 1e-41 | HQ858721.1 Zea mays clone UT1188 MYB-IF35 transcription factor mRNA, partial cds. | |||
GenBank | HQ858768 | 1e-41 | HQ858768.1 Zea mays clone UT1749 MYB transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819210.1 | 1e-55 | myb-related protein P-like | ||||
Swissprot | P27898 | 4e-37 | MYBP_MAIZE; Myb-related protein P | ||||
TrEMBL | A0A0A9JQV1 | 1e-59 | A0A0A9JQV1_ARUDO; Uncharacterized protein | ||||
STRING | Si002107m | 6e-55 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 4e-36 | myb domain protein 111 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_22887A |