PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_22875A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family G2-like
Protein Properties Length: 467aa    MW: 50330.5 Da    PI: 8.15
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_22875AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like63.24.9e-20109157252
                    G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 
                                +rl+WtpeLH+rFv+a + L G  kA+P +il +m+v+g+t+e+v+SHLQ+
  Oropetium_20150105_22875A 109 TRLVWTPELHARFVRACRIL-G-SKAVPTKILGVMNVEGVTRENVASHLQQ 157
                                79******************.4.57*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-18106157IPR009057Homeodomain-like
SuperFamilySSF466891.24E-10107157IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-16109157IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MHGDNRTRDY TRADFSSPSL PLCSFVSSPS PQHSAIIMLA TAAGSGGAGG NRPPFKPHLL  60
ERTPDLQPTT KRKQRRSPVS VVSPAASSNG SDDDGVLPVL QQQINKPRTR LVWTPELHAR  120
FVRACRILGS KAVPTKILGV MNVEGVTREN VASHLQQAPS PSPSPSLNDP PPRTTPPPPP  180
PPPPRGSSFA AAAHHMPQHP PQIGHGHGGH AMLHRQALLS APPTTSVHQQ AQDNFTAAMA  240
ALPVPQQQQL FFQHQSPQLQ AQILRRMAMM RQQQPPAAAV APPGHMMNQN HHHHHHHPTG  300
APGHMNQNRH HPAAVAMNYE LGAVASGGMP SQHRRVQPPR IEASRAAVNT TNDGARDAFR  360
FLAYCDPDFD VGLFGSVPEA AGKRGDEQTE EAPRIMGLPQ MRQTAAVEVG TGPAAVPPAA  420
EPDFTASAEP DDSGQQEEPC DILRFWDTPS EPSMDYYREF PPDKPT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_22875A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46640.22e-14G2-like family protein