PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_22789A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 363aa    MW: 40201.1 Da    PI: 6.5081
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_22789AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM93.72.9e-29642091128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......leleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr 76 
                                lp G++F+P+d+el+ ++L+++ + ++       +++  +i+e  +i++++P++Lp  +k++ ++ +fF++ +++y  g+rk+r
  Oropetium_20150105_22789A  64 LPIGIKFDPSDSELL-QHLEERSNPTNlessvivNQFIATIEEPeGICYTHPENLP-GIKTDGSSRHFFHRISNAYGCGHRKRR 145
                                699************.899999988885555553222224777768**********.778889999****************** PP

                        NAM  77 a.........tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektd...Wvmheyrl 128
                                +          k+ +W++tg++kev++++g++ g kk+Lv+++g+++ g+ktd   Wvmh+y+l
  Oropetium_20150105_22789A 146 KidnhhtasdDKKVRWHKTGRSKEVYDESGAKRGWKKILVLHTGSKKAGVKTDragWVMHQYHL 209
                                878888777666999******************************99999886666******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-3151228IPR003441NAC domain
PROSITE profilePS5100527.64564228IPR003441NAC domain
PfamPF023655.7E-1265209IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MFCMEPPGER PWIMNGKGIA EKIRDPTQVS YLRLAEVVEE ACIKCPTCQH SADCSNVPIL  60
WPKLPIGIKF DPSDSELLQH LEERSNPTNL ESSVIVNQFI ATIEEPEGIC YTHPENLPGI  120
KTDGSSRHFF HRISNAYGCG HRKRRKIDNH HTASDDKKVR WHKTGRSKEV YDESGAKRGW  180
KKILVLHTGS KKAGVKTDRA GWVMHQYHLG ADEAEKDRQF VVSKIFYQSA SKQVDKSAMN  240
VPVVEQDASA VKIDPRTPNT DPPQPLRPNN STCKTEQHTS PFLLDQGFVA EPGSDSGAQT  300
FLDNGKAVVS STQVLEPDAG PGSQLSKGSW ESGVQDVHLG SQDNLLALLE LESFYNSDLD  360
AF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_22789A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824945.11e-115SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X2
TrEMBLA0A2S3I7M81e-114A0A2S3I7M8_9POAL; Uncharacterized protein
STRINGPavir.Ga01597.1.p1e-112(Panicum virgatum)
STRINGSi012740m1e-114(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21103799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.14e-63NAC family protein