PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_22775A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | NAC | ||||||||
Protein Properties | Length: 227aa MW: 24841.3 Da PI: 5.8502 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 32.7 | 2.1e-10 | 28 | 161 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr. 76 lppG+rF+P l+ L ++ + + + ++ + ++iy v P+ Lp k+ + f +++ a + r Oropetium_20150105_22775A 28 LPPGVRFRPGVPCLLEALLIPRSLSGHtdpsghIARGDIAEGIEIYPVRPEALPlPKC-----NRGFDRPAAAVLAGSGTDARl 106 79*****************9987776646665444434667779*********93233.....233545555555555556665 PP NAM 77 atksgyWkatgkdkevlsk..kgelvglkktLvfykg.rapkgektdWvmheyrl 128 +++ g+W g++ke + + + ++ +k +vfyk ra + + W m+e rl Oropetium_20150105_22775A 107 VAAGGIWLPYGNEKECYIRedGAAVHAFRKHFVFYKPaRAGGHKLSAWRMEELRL 161 999************9998656667899*******872444455699*****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.18E-13 | 24 | 187 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 18.408 | 28 | 188 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MQHCPEAQAL RDPSHPMAQQ PQPATEMLPP GVRFRPGVPC LLEALLIPRS LSGHTDPSGH 60 IARGDIAEGI EIYPVRPEAL PLPKCNRGFD RPAAAVLAGS GTDARLVAAG GIWLPYGNEK 120 ECYIREDGAA VHAFRKHFVF YKPARAGGHK LSAWRMEELR LDETAPAFRG VTFHPSAKDL 180 VILKVYIDSE IPDEEPLIEY YTSNSDDEDK EITMRDAIAA LSPRVA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_22775A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12891 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62700.1 | 3e-08 | Arabidopsis NAC domain containing protein 26 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_22775A |