PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_22684A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB
Protein Properties Length: 343aa    MW: 37119.6 Da    PI: 6.6282
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_22684AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.71.1e-121455148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g+WT+eEd++l+ +++ +G g+W++ +++ g +     c++rw +yl
  Oropetium_20150105_22684A 14 KGPWTPEEDQKLLAYIEHHGHGCWRSLPAKAG-T-----CRLRWTNYL 55
                               79******************************.4.....*******97 PP

2Myb_DNA-binding53.17.3e-1761106148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
  Oropetium_20150105_22684A  61 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 106
                                89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.8E-20558IPR009057Homeodomain-like
PROSITE profilePS5129414.536955IPR017930Myb domain
SuperFamilySSF466897.26E-2611102IPR009057Homeodomain-like
SMARTSM007178.2E-101357IPR001005SANT/Myb domain
PfamPF002492.7E-111455IPR001005SANT/Myb domain
PROSITE profilePS5129425.89156110IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-2659110IPR009057Homeodomain-like
SMARTSM007171.2E-1660108IPR001005SANT/Myb domain
PfamPF002493.9E-1661106IPR001005SANT/Myb domain
CDDcd001676.10E-1263106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGRSPCCEKE GLKKGPWTPE EDQKLLAYIE HHGHGCWRSL PAKAGTCRLR WTNYLRPDIK  60
RGKFSLQEEQ TIIQLHALLG NRWSAIATHL PKRTDNEIKN YWNTHLKKRL AKMGIDPVTH  120
KSRSDALAVG VGEQHVKAAA HLSHTAQWES ARLEAEARLA REAKLRALAA STSSAPPALQ  180
PSAPAVVPGG LESPTSTLSF SESAATLASV LEAHAHGAVV ARVAMQQPMQ QQAAFEEACK  240
EQEQQQHWPD FDTGFATAGF TGLLLADGSL SQDQIRPAAA RDHAEAAAND AGLQAETSEE  300
EERNYWDTIL LNLVNSSSSA SLPTTTVAPA TEAYSSPAAL EF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-24121105108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_22684A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3603781e-131AK360378.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1116O14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975862.11e-140transcription factor MYB16
SwissprotQ9LXF11e-106MYB16_ARATH; Transcription factor MYB16
TrEMBLI1PLX91e-139I1PLX9_ORYGL; Uncharacterized protein
TrEMBLK3Y8111e-138K3Y811_SETIT; Uncharacterized protein
STRINGORGLA04G0119800.11e-140(Oryza glaberrima)
STRINGSi010352m1e-139(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56093758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-84myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]