PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_22568A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family TALE
Protein Properties Length: 616aa    MW: 66464.8 Da    PI: 6.7829
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_22568AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.11.5e-083483851954
                                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                Fe   ++yps  ++  L++++gL+ +qV++WF N R +
  Oropetium_20150105_22568A 348 FEHflHPYPSDVDKHILSRQTGLSRSQVSNWFINARVR 385
                                664459******************************88 PP
2BELL87.61.4e-28209280172
                       BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                e +elq+ k kL  +leeVd+rY++y+eq++++++ Feavag   a+ Yt+lA+++iSrhFr+L+d i+ q+
  Oropetium_20150105_22568A 209 EAMELQRLKDKLYIMLEEVDRRYRRYCEQMRALAGGFEAVAGDRMAAAYTALASRTISRHFRNLRDGIVAQL 280
                                5689*****************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.7E-42145278IPR006563POX domain
PfamPF075263.6E-43148276IPR006563POX domain
PROSITE profilePS5007111.693326389IPR001356Homeobox domain
CDDcd000861.00E-11329390No hitNo description
SMARTSM003891.9E-8329393IPR001356Homeobox domain
SuperFamilySSF466896.84E-17330396IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-27332395IPR009057Homeodomain-like
PfamPF059202.2E-17346385IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MAHDPSLGFA DYFSVAAADA ATAVVMPPAM EEGTPAELFG LHADMELLGM RGLAASMPAA  60
AHNSKAVLVD DSAGSNNATM RFLSDGHHQQ QPSQQAPLSL SLCRPDGVGG MATLHQQHLG  120
GSSSRHHHHQ QQQPAAAWTT HDYSAWHLRS SRFLLPAQQL LQEFCSLPVD SRSKHTKKLS  180
QEQQEQDGGD GSSSASASWA PSPQIQAMEA MELQRLKDKL YIMLEEVDRR YRRYCEQMRA  240
LAGGFEAVAG DRMAAAYTAL ASRTISRHFR NLRDGIVAQL QAVRKALGEK DVAVPGMTRG  300
ETPRLRVLDQ CIRQQKALNQ AGLMESHPWR PQRGLPERAV TILRAWLFEH FLHPYPSDVD  360
KHILSRQTGL SRSQVSNWFI NARVRLWKPM VEEMYVQEMK GDHQHQPQQD VSGGLINPND  420
PSSSSQQASA EAYNNNNGRH GVGGGGEADE NNGGVAPSNN GVDRKPTRDQ LLMHDAGSLA  480
AVVNVGRGIA RAGGGTRLQE NFGAMVDHLD FDAYDGGHHQ QAGFGAGGVS LTLGLQQHEH  540
ADSHDSGVNI AFGAPSSAGY LFAAGGGGHH QQMDGGGQHV QFGAAMDGGE APHAQEHYRT  600
TSLSTGFHLL RDLAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A4e-16335392158Homeobox protein Meis1
4xrs_B4e-16335392158Homeobox protein Meis1
5bng_A4e-16335393159Homeobox protein Meis2
5bng_B4e-16335393159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_22568A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9579620.0EU957962.1 Zea mays clone 1638491 BEL1-related homeotic protein 14 mRNA, complete cds.
GenBankEU9579800.0EU957980.1 Zea mays clone 1639087 BEL1-related homeotic protein 14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985907.10.0homeobox protein BEL1 homolog
RefseqXP_012698473.10.0homeobox protein BEL1 homolog
RefseqXP_012698474.10.0homeobox protein BEL1 homolog
TrEMBLA0A1E5UVC10.0A0A1E5UVC1_9POAL; Homeobox protein BEL1-like protein
STRINGPavir.Ib00072.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38143764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.19e-88TALE family protein