PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_22565A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family TALE
Protein Properties Length: 326aa    MW: 35540.1 Da    PI: 6.1479
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_22565AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.31.1e-072753082154
                                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                k +yp+++++++L +++gL+ +q+ +WF N+R +
  Oropetium_20150105_22565A 275 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 308
                                469*****************************87 PP
2ELK25.33.5e-09229250122
                        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                ELK +L++++++++ ++++E++
  Oropetium_20150105_22565A 229 ELKIELKQGFKSRIEDVREEIL 250
                                9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.6E-1662106IPR005540KNOX1
PfamPF037907.6E-1564104IPR005540KNOX1
SMARTSM012565.5E-23117172IPR005541KNOX2
PfamPF037911.0E-17120171IPR005541KNOX2
PROSITE profilePS512139.132229249IPR005539ELK domain
PROSITE profilePS5007111.726249312IPR001356Homeobox domain
SuperFamilySSF466894.28E-16251315IPR009057Homeodomain-like
SMARTSM003891.8E-10251316IPR001356Homeobox domain
CDDcd000865.89E-12252313No hitNo description
Gene3DG3DSA:1.10.10.603.0E-25256315IPR009057Homeodomain-like
PfamPF059201.2E-17269308IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MQGGGDHQGG GNLAMDMGVG FASSVGGGGG GGAECSSSSA ATVAAAAAAA AAAAAAEAEE  60
RQLIKGEIAV HPLCEQLVSA HVGCLRVATP IDHLPLIDAQ LSQSSGLLHS YAAHHRPFLS  120
PHDKHDLDSF LGQYLMLLCS FREQLQQHVR VHAVEAVMAC REIEQSLQDL TGATLEEGMG  180
ATMSEDEEDP PIMEGTMDMA SADAHDMLGF GPLMPTDSER SLMERVRQEL KIELKQGFKS  240
RIEDVREEIL RKRRAGKLPG DTTSILKQWW QQHAKWPYPT EDDKAKLVEE TGLQLKQINN  300
WFINQRKRNW HNNSQTSTLK SKRKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305324RKRNWHNNSQTSTLKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_22565A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9669070.0EU966907.1 Zea mays clone 298091 homeobox protein HD1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468611.20.0homeobox protein knotted-1-like 3
SwissprotQ94LW30.0KNOS3_ORYSJ; Homeobox protein knotted-1-like 3
TrEMBLA0A1B6QQV90.0A0A1B6QQV9_SORBI; Uncharacterized protein
STRINGOPUNC03G01680.20.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-147KNOTTED-like homeobox of Arabidopsis thaliana 7