PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_22486A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family TALE
Protein Properties Length: 344aa    MW: 37692.4 Da    PI: 6.524
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_22486AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox308.6e-102693042055
                                HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                   Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Oropetium_20150105_22486A 269 YKWPYPSETEKIALAESTGLDQKQINNWFINQRKRH 304
                                4679*****************************885 PP
2ELK37.93.9e-13224245122
                        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                ELK qLl+KYsgyL+sL+qEFs
  Oropetium_20150105_22486A 224 ELKYQLLKKYSGYLSSLRQEFS 245
                                9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.5E-2181125IPR005540KNOX1
PfamPF037909.0E-2282123IPR005540KNOX1
SMARTSM012565.6E-30128179IPR005541KNOX2
PfamPF037912.1E-24134177IPR005541KNOX2
SMARTSM011881.2E-7224245IPR005539ELK domain
PROSITE profilePS5121311.627224244IPR005539ELK domain
PfamPF037894.1E-10224245IPR005539ELK domain
PROSITE profilePS5007112.892244307IPR001356Homeobox domain
SuperFamilySSF466891.2E-19245318IPR009057Homeodomain-like
SMARTSM003894.4E-13246311IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.4E-28249308IPR009057Homeodomain-like
CDDcd000865.06E-13256308No hitNo description
PfamPF059209.5E-17264303IPR008422Homeobox KN domain
PROSITE patternPS000270282305IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDQSFGNLGA GGSSSGGGSN SKAASSTSFL QLPLSSAAAS PAGGVAYYGT PLALLHQAAA  60
GPSSSSQYGR HSVEISPAEA EAIKAKIVAH PQYSALLTAY LDCQKVGAPP DVLEKLTAMA  120
AKLDARPPNR HEQRDPELDQ FMEAYCNMLV KYREELTRPI DEAMEFLKRV EAQLDSISGA  180
SGGPARLSLA DGKSEGVGSS EDDMDASGRE NEPPEIDPRA EDKELKYQLL KKYSGYLSSL  240
RQEFSKKKKK GKLPKEARQK LLHWWELHYK WPYPSETEKI ALAESTGLDQ KQINNWFINQ  300
RKRHWKPSED MPFVMMEGFH PQNAAALYMD GPFMADGMYR LGS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}.
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:9869405}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_22486A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1014690.0FP101469.1 Phyllostachys edulis cDNA clone: bphyst005d10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955415.10.0homeobox protein rough sheath 1
SwissprotO650341e-176KNOSC_ORYSI; Homeobox protein knotted-1-like 12
SwissprotO804161e-176KNOSC_ORYSJ; Homeobox protein knotted-1-like 12
TrEMBLA0A1E5V8B80.0A0A1E5V8B8_9POAL; Homeobox protein knotted-1-like 12
STRINGPavir.Bb00225.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40613873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-104KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Sato Y, et al.
    Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
    EMBO J., 1999. 18(4): p. 992-1002
    [PMID:10022841]
  2. Ito Y,Eiguchi M,Kurata N
    KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
    Genesis, 2001. 30(4): p. 231-8
    [PMID:11536429]
  3. Nagasaki H,Sakamoto T,Sato Y,Matsuoka M
    Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15.
    Plant Cell, 2001. 13(9): p. 2085-98
    [PMID:11549765]
  4. Postma-Haarsma AD, et al.
    Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
    Plant Mol. Biol., 2002. 48(4): p. 423-41
    [PMID:11908517]
  5. Kuijt SJ, et al.
    Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
    Plant Mol. Biol., 2004. 55(6): p. 781-96
    [PMID:15604716]
  6. Yin H, et al.
    SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice.
    Planta, 2013. 237(1): p. 15-27
    [PMID:22956125]