PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_22477A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family AP2
Protein Properties Length: 661aa    MW: 70859.7 Da    PI: 6.997
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_22477AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2392e-12289345155
                        AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  Oropetium_20150105_22477A 289 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 345
                                78*******************77776664346655.77******************98 PP
2AP2378.4e-12377422755
                        AP2   7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                r++++ grW A+I  +s    +k  +lg+f t eeAa+a++ a+ k++g
  Oropetium_20150105_22477A 377 RRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 422
                                8999********999754...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-9289345IPR001471AP2/ERF domain
CDDcd000181.23E-17289353No hitNo description
SuperFamilySSF541712.55E-14289354IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-12290354IPR001471AP2/ERF domain
PROSITE profilePS5103217.359290353IPR001471AP2/ERF domain
SMARTSM003808.3E-23290359IPR001471AP2/ERF domain
PRINTSPR003675.1E-6291302IPR001471AP2/ERF domain
PROSITE profilePS5103216.542371430IPR001471AP2/ERF domain
PfamPF008471.3E-6377422IPR001471AP2/ERF domain
SMARTSM003809.6E-27377436IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-15378430IPR001471AP2/ERF domain
CDDcd000187.59E-20378432No hitNo description
SuperFamilySSF541711.63E-14378431IPR016177DNA-binding domain
PRINTSPR003675.1E-6412432IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MTNNNGSGAG TNAAAGGWLG FSLSPHMAAS PMDEHHHHHH HVQXXXXXXX XXXXFPSVTA  60
AAYGIDAAAA TSAPYYTPPQ LASMPLKSDG SLCIMEALRR TDQDHHHQHG PKLEDFLGAA  120
QSQAMALSLD NAASSFYYYG GGGGGVGVGH HHHHHHGLLQ DASYVGPSAP AAAQALXXXX  180
XXXXXXXXXM AASWVAAARA ENGGFLSQQH QHQHQQHHHP LALSMGSASL SSCVTTVAAQ  240
HGGAGEYGGV LAXXXXXXXX XXXXXXGGGQ QKQPVHHRKS IDTFGQRTSQ YRGVTRHRWT  300
GRYEAHLWDN SCKKEGQTRK GRQGGYDMEE KAARAYDLAA LKYWGPSTHI NFPLEDYQEE  360
LEEMKNMTRQ EYVAHLRRHH QHGRWQARIG RVSGNKDLYL GTFSTQEEAA EAYDIAAIKF  420
RGLNAVTNFD ITRYDVDRIM ESNTLLPGDL ARRKTKDDDN ELAAVVVVPA PAADEDGTGA  480
VSAAAAMVXX XXXXXXXXGG AAADVWKIAA ALSAAPRVGG DEHGGYQQHH GHQHQEVMSS  540
AGGGGGGAGA EAFSSVLHDL QVVTADHNMP MSSAASSLVT SLSNSREASP DRCGGRGGLS  600
MLFSNSKPSP SSSSAHHHXX XXXXXXXXXP LPLVGSWASP PRPTAVSIAH LPLFAAWTDA  660
*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_22477A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0882634e-84BT088263.1 Zea mays full-length cDNA clone ZM_BFc0105N21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155443.10.0AP2-like ethylene-responsive transcription factor ANT isoform X2
SwissprotQ84Z020.0CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A446L0Q30.0A0A446L0Q3_TRITD; Uncharacterized protein
STRINGPavir.Ba03911.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-103AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]