PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_22457A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | NAC | ||||||||
Protein Properties | Length: 256aa MW: 28380 Da PI: 9.5206 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 53.1 | 1.1e-16 | 20 | 164 | 6 | 128 |
NAM 6 rFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkya....tgkrknrat 78 + hP d el++ yL++ v++++ ++ ++i+ ++y+ +P++L + ++++e+ wyf s+ ++k++ g r r++ Oropetium_20150105_22457A 20 ERHPCDLELIQAYLRPWVNSRRtaPPAVSCIHAENVYSEDPEKLTRryapaVARNGEHAWYFLSRLRTKANgicdFGARFARTV 103 559****************99976566678**************8446675555677899999998888776655588****88 PP NAM 79 k..sgyWkatgkdkevlsk...kgelvglkktLvfy......kgrapkgektdWvmheyrl 128 + g+Wk + ++++ ++++ g +++L + +g ++ g+ t W+m+e rl Oropetium_20150105_22457A 104 EngLGRWKIRPGQMAIVDVfddHRRQFGRRRSLHLMyekveeRGGKRVGTWTGWIMEELRL 164 823466**887777777766669999*******98778887778889999********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 24.098 | 15 | 186 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-8 | 18 | 164 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.98E-21 | 19 | 186 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MASGDDDNDA KSPPRAVDFE RHPCDLELIQ AYLRPWVNSR RTAPPAVSCI HAENVYSEDP 60 EKLTRRYAPA VARNGEHAWY FLSRLRTKAN GICDFGARFA RTVENGLGRW KIRPGQMAIV 120 DVFDDHRRQF GRRRSLHLMY EKVEERGGKR VGTWTGWIME ELRLGIELGR SGRDVDLCAL 180 CKVYRSSHHP ARPSDGAPAV EAVVAGPEEG DGSSANTASE TQELGAGMIP LAAAFGRLRA 240 RGGRRGQRRQ VCRAA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_22457A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4011 | 29 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 3e-13 | NAC domain containing protein 47 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_22457A |