PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_22456A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | NAC | ||||||||
Protein Properties | Length: 100aa MW: 11501 Da PI: 9.6114 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 26.4 | 1.9e-08 | 20 | 92 | 10 | 77 |
NAM 10 tdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknra 77 +d el+ +yL++ v + + ++e+ ++ +d+y+ +P++L + ++++++ wy ++ + g+r r+ Oropetium_20150105_22456A 20 SDPELIERYLRPWVVSGTePPAESLVHVADVYSEHPEELTRryapaVARNGDRAWYCLCRLKY-IGVGTRFVRT 92 699*********97766636666668888**********844666555668889999887654.3457777774 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 12.557 | 11 | 99 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.92E-9 | 20 | 91 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 100 aa Download sequence Send to blast |
MPRRTCRAWR RTSNPSPPTS DPELIERYLR PWVVSGTEPP AESLVHVADV YSEHPEELTR 60 RYAPAVARNG DRAWYCLCRL KYIGVGTRFV RTVNTRDGW* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_22456A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D3ES84 | 3e-16 | A0A0D3ES84_9ORYZ; Uncharacterized protein | ||||
STRING | OBART01G25780.1 | 6e-17 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP27445 | 3 | 3 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_22456A |