PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_22455A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

NAC

Protein Properties

Length: 416aa MW: 45431.3 Da PI: 4.5352

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_22455A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	56.2	1.2e-17	26	159	8	128
NAM 8 hPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.k....kvkaeekewyfFskrdkkya.tgkrknra..tksg 81 hP+ l+ +yL++ v++ +++ ++ +d+y++ePw+L + ++++e+ wyf ++ + ++ ++ r r+ t g Oropetium_20150105_22455A 26 HPSTVALIEDYLRPWVASGCtaAPAAPYVHVADVYSAEPWELAwRfasaVTHKGERAWYFLTRLRLIKTvRDPRFVRKvdTGVG 109 89999*********9998444443458888******843566544457779999998776554256677774236688 PP NAM 82 yWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 W++ k+++v++ +g+ vg ++ + f k + +k ++t W+m +rl Oropetium_20150105_22455A 110 WWHSESKEQPVVDDvlgGGRRVGRRQFFHFRKMEGEKNVRTGWIMWKFRL 159 8*******999999999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	27.627	19	182	IPR003441	NAC domain
Pfam	PF02365	4.7E-9	26	159	IPR003441	NAC domain
SuperFamily	SSF101941	6.54E-25	26	182	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MASSAGGGDT NAKELPHVMA ADLDSHPSTV ALIEDYLRPW VASGCTAAPA APYVHVADVY 60 SAEPWELAWR FASAVTHKGE RAWYFLTRLR LIKTVRDPRF VRKVDTGVGW WHSESKEQPV 120 VDDVLGGGRR VGRRQFFHFR KMEGEKNVRT GWIMWKFRLD VDIVGRSDRD EELCVLCKVY 180 RSPRHPAWPG DTREPGEKPA DDDDVPAESV ATSPALEDEN SSCLAALLAL VRDEEPANDD 240 FAAESFVAAP ALEDDNSFLA ELLALGPDER PANDDASAEK SEDENSCLAA LLALVHDEKP 300 PNDDASAEKF EDENSCLAAL LALVHDEKPA NDDAFAEKFE AAPALQRDAA PSDDSSAAPR 360 KRKRAADGNP SGSAAGPQHC LRCGFHLDAA QAAVDPDLET GESSQRKNRT FYHFI*

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MASSAGGGDT NAKELPHVMA ADLDSHPSTV ALIEDYLRPW VASGCTAAPA APYVHVADVY  60
SAEPWELAWR FASAVTHKGE RAWYFLTRLR LIKTVRDPRF VRKVDTGVGW WHSESKEQPV  120
VDDVLGGGRR VGRRQFFHFR KMEGEKNVRT GWIMWKFRLD VDIVGRSDRD EELCVLCKVY  180
RSPRHPAWPG DTREPGEKPA DDDDVPAESV ATSPALEDEN SSCLAALLAL VRDEEPANDD  240
FAAESFVAAP ALEDDNSFLA ELLALGPDER PANDDASAEK SEDENSCLAA LLALVHDEKP  300
PNDDASAEKF EDENSCLAAL LALVHDEKPA NDDAFAEKFE AAPALQRDAA PSDDSSAAPR  360
KRKRAADGNP SGSAAGPQHC LRCGFHLDAA QAAVDPDLET GESSQRKNRT FYHFI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_22455A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4011	29	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G29035.1	1e-10	NAC domain containing protein 3

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_22455A