PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_22102A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GRAS
Protein Properties Length: 686aa    MW: 72642.9 Da    PI: 6.4218
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_22102AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS416.32.6e-1273176782374
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalkl 83 
                                 +lLl+cAe v++++l  a+++L ++ ela+p g+++qR+aayf+eA++arl++s+ +ly+ lp+s+ +  +   s+++aa+++
  Oropetium_20150105_22102A 317 LTLLLQCAESVNADNLDDAHQTLLEIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLPASSPAAARiiNSRVAAAFQV 400
                                579************************************************************999988777888899999*** PP

                       GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLak 167
                                f+ +sP++kfsh+taNqaI ea+e+e+rvHi+D+di+qGlQWp L++ LasRp+gpp++R+Tg+g+    s e+le+tg+rL++
  Oropetium_20150105_22102A 401 FNGISPFVKFSHFTANQAIQEAFEREDRVHIVDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGA----SMEALEATGKRLSD 480
                                ******************************************************************....************** PP

                       GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251
                                fA++lg+pfef++ va++  ++++e+L v ++Ea+aV++ +  h+l+d ++s ++    +L+l+++l Pkvv++veq+++h s+
  Oropetium_20150105_22102A 481 FADTLGLPFEFRA-VAEKAGNVDPEKLGVTRREAVAVHWLH--HSLYDVTGSDSN----TLWLIQRLAPKVVTMVEQDLSH-SG 556
                                *************.7*************************9..999999999999....**********************.89 PP

                       GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                                sFl+rf+ea++yysalfdsl+a+++++s er++vE++ll+rei+nv+a  g +r  + + +++Wre+l ++GF++++l  +aa+
  Oropetium_20150105_22102A 557 SFLARFVEAIHYYSALFDSLDASYGEDSPERHVVEQQLLSREIRNVLAVGGPARSGDVK-FGSWREKLAQSGFRAASLAGSAAA 639
                                9****************************************************988887.************************ PP

                       GRAS 336 qaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                qa+lll +++sdgy++ ee+g+l lgWkd  L+++SaWr
  Oropetium_20150105_22102A 640 QASLLLGMFPSDGYTLVEENGALKLGWKDLCLLTASAWR 678
                                **************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.597290658IPR005202Transcription factor GRAS
PfamPF035149.1E-125317678IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MGSSSLLLFP SSSSAASAPQ SYSSHAHAHA TTSSSSSSSH SLLPPLPSSS SSSSQRQQDH  60
LLLHYLNHLD QQYDAAAAMV RKRPAPDNVD LPPPRRHVTG DLSDVTAAAA ATGAPNQSSA  120
ASAQLPALPT QLQLPAFQHQ HAAADVVDVA AAPPAEVTAA STTAWVDGII RDIIGSSGAA  180
VSVAQLIQNV REIIHPCNXX XXXXXXXXXX XXXXXSSDPA ALPHQQHHPA LIHHHGAPPA  240
AAPGVAALPP PPPSLPADKQ HSRHEEEPAP PQSPKEPSAE ETAAAAAAAA VAAAAAAKER  300
KXXXXXXXXX XXXXXLLTLL LQCAESVNAD NLDDAHQTLL EIAELATPFG TSTQRVAAYF  360
AEAMSARLVS SCLGLYAPLP ASSPAAARII NSRVAAAFQV FNGISPFVKF SHFTANQAIQ  420
EAFEREDRVH IVDLDIMQGL QWPGLFHILA SRPGGPPRVR LTGLGASMEA LEATGKRLSD  480
FADTLGLPFE FRAVAEKAGN VDPEKLGVTR REAVAVHWLH HSLYDVTGSD SNTLWLIQRL  540
APKVVTMVEQ DLSHSGSFLA RFVEAIHYYS ALFDSLDASY GEDSPERHVV EQQLLSREIR  600
NVLAVGGPAR SGDVKFGSWR EKLAQSGFRA ASLAGSAAAQ ASLLLGMFPS DGYTLVEENG  660
ALKLGWKDLC LLTASAWRPI QSAGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.032267925380Protein SCARECROW
5b3h_A0.032267924379Protein SCARECROW
5b3h_D0.032267924379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250, ECO:0000269|PubMed:17446396}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_22102A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0636820.0BT063682.1 Zea mays full-length cDNA clone ZM_BFc0094J16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977413.10.0protein SCARECROW 1-like
SwissprotQ2RB590.0SCR1_ORYSJ; Protein SCARECROW 1
TrEMBLA0A368S1R40.0A0A368S1R4_SETIT; Uncharacterized protein
STRINGOS11T0124300-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein