PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_22058A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GRAS
Protein Properties Length: 652aa    MW: 67313.7 Da    PI: 6.4074
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_22058AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS287.24.5e-882826502374
                       GRAS   2 velLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 
                                v++L e+A+  ++gd+  a+++Larl+ +   a  +g+p+ R a+yf+eAL+  l+   ++ + a +p ++++++++ +l a+k
  Oropetium_20150105_22058A 282 VDQLAEAAKLAEAGDALGAREILARLNYRlpaAPAAGTPLLRSAFYFKEALRLALSP--TGSAPAPTPAASTPYDVVLKLGAYK 363
                                689*************************999455566*******************9..5666667888888899********* PP

                       GRAS  83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..eg......ppslRiTgvgspesgskeel 158
                                +fs+vsP+l+f+hlt+ qa+l+++ g++++H++Dfdi++G QW++L+q+La+R   +g      ++ l++T+++sp+s++  el
  Oropetium_20150105_22058A 364 AFSDVSPVLQFAHLTCVQAVLDELGGASCIHVLDFDIGMGEQWASLMQELAQRGgrGGpgattaTAALKVTALVSPASHHPLEL 447
                                *****************************************************9652256666688****************** PP

                       GRAS 159 eetgerLakfAeelgvpfefnvlvakrledleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241
                                + ++e+L+ fA+elgv f+f v+   ++++l++ eL ++ +g+a+aV+l +   ++     +     ++vL+lvk+l +kvvv 
  Oropetium_20150105_22058A 448 QLIHENLSGFANELGVLFQFAVF---NIDTLDPAELvAIASGDAVAVHLPVGSAHVA----T----MPAVLRLVKRLGAKVVVS 520
                                **********************9...999999999956677***********99998....4....456*************** PP

                       GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325
                                v++ +d+++ +F++++++a++ +++l++s++a  ++++e ++k+Er+l+++ +++ v   g++r     +   Wr+ +++aGF 
  Oropetium_20150105_22058A 521 VDHGCDRTELPFAAHLFQAFQSCVSLLESVDAV-GTDAEMAAKIERFLVQPGVEQRVV--GRHRCGGVDKPLPWRSVFQSAGFV 601
                                ******************************998.8999*****************997..566779999*************** PP

                       GRAS 326 pvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                pv+ s++a++qa++ll+kv+  g+rve++ g+l+l+W++ +LvsvSaWr
  Oropetium_20150105_22058A 602 PVATSSFAESQAESLLKKVALMGFRVEKRGGALCLYWQRGQLVSVSAWR 650
                                ************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.376255630IPR005202Transcription factor GRAS
PfamPF035141.6E-85282650IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MLFGGSTPEG HTGTLPLLLQ QRQGLDAGKV SVAGGLWEPT SVLDHRHSPS PSPPTSASTL  60
SSPLGSATAG VAALAGPNAR NVSPPPAAGP WPGRVPVEEA GREEWQLTPL DMGLGPGEGW  120
DPAGAVLSDA AATPGGLGPD HTLLRWIIGS DDASAGMMDP PVLELDHNAP SSMVSSAAAF  180
GPNLAFAPAM EDAKPAAPFG HAPNFVLHHH QHHHPQPHAA AFFGSHLSSV DAAAAAAPKR  240
QHPMGGAAPA PKLPPFPAAG GFVPTALKPK AEAANEEAAA AVDQLAEAAK LAEAGDALGA  300
REILARLNYR LPAAPAAGTP LLRSAFYFKE ALRLALSPTG SAPAPTPAAS TPYDVVLKLG  360
AYKAFSDVSP VLQFAHLTCV QAVLDELGGA SCIHVLDFDI GMGEQWASLM QELAQRGGRG  420
GPGATTATAA LKVTALVSPA SHHPLELQLI HENLSGFANE LGVLFQFAVF NIDTLDPAEL  480
VAIASGDAVA VHLPVGSAHV ATMPAVLRLV KRLGAKVVVS VDHGCDRTEL PFAAHLFQAF  540
QSCVSLLESV DAVGTDAEMA AKIERFLVQP GVEQRVVGRH RCGGVDKPLP WRSVFQSAGF  600
VPVATSSFAE SQAESLLKKV ALMGFRVEKR GGALCLYWQR GQLVSVSAWR C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-3031365032375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_22058A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983723.10.0scarecrow-like protein 6 isoform X1
TrEMBLA0A368SNB30.0A0A368SNB3_SETIT; Uncharacterized protein
STRINGSb01g029650.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67232954
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-74GRAS family protein