PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_21720A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

Protein Properties

Length: 283aa MW: 30536.7 Da PI: 10.3233

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_21720A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	91.6	6e-29	34	147	1	97
EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvka 71 f+kv tpsdv+k++rlv+pk++ae++ +++ ++ l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+ Oropetium_20150105_21720A 34 FEKVVTPSDVGKLNRLVIPKQHAERYfpalgsavpappaASSEGKGLVLSFEDRAGKAWRFRYSYWNSSQSYVMTKGWSRFVKE 117 99***************************9999999977778999********************************* PP HT--TT-EEEEE...E-SS.SEE..EEEEE CS B3 72 ngLkegDfvvFk...ldgr.sefelvvkvf 97 + L +gD+v F + s++++++ ++ Oropetium_20150105_21720A 118 KSLGAGDTVAFArgaAGDAaSRGRFFIDFR 147 *********9443112235555555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.7E-38	29	135	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.15E-28	31	132	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.21E-26	32	128	No hit	No description
Pfam	PF02362	8.3E-27	34	148	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.071	34	150	IPR003340	B3 DNA binding domain
SMART	SM01019	1.2E-20	34	150	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MEFAPFMTAR GGGAEESEMG RGGGVAWVER EHMFEKVVTP SDVGKLNRLV IPKQHAERYF 60 PALGSAVPAP PAASSEGKGL VLSFEDRAGK AWRFRYSYWN SSQSYVMTKG WSRFVKEKSL 120 GAGDTVAFAR GAAGDAASRG RFFIDFRRRR QGAAFLQPPQ RLPLPSVPVC RPWQQDYSYS 180 TSYAAAPALP SGHVLFLRPQ MPAAVVLTSV PVRVAASAVE ATTRSKRVRL FGVNLDTAPP 240 VMEDDDARVT RTTSTLLQLP SPSSSTSSST AGKDMCSLDL GL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	1e-52	29	149	3	113	B3 domain-containing transcription factor NGA1
5os9_B	1e-52	29	149	3	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_21720A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ726966	4e-85	KJ726966.1 Zea mays clone pUT3666 ABI3VP1 transcription factor (ABI38) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796710.1	1e-117	putative B3 domain-containing protein Os10g0537100
Swissprot	Q8LNN8	4e-93	Y1071_ORYSJ; Putative B3 domain-containing protein Os10g0537100
TrEMBL	A0A1E5V5B2	1e-121	A0A1E5V5B2_9POAL; Putative B3 domain-containing protein
STRING	Pavir.J06582.1.p	1e-123	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP583	37	168

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61970.1	1e-44	B3 family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_21720A

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]