PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_21467A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | SBP | ||||||||
Protein Properties | Length: 217aa MW: 23888.6 Da PI: 8.7706 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 133.8 | 5.7e-42 | 72 | 149 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +C v+gC++dls++++yhrrhkvCe+hsk+pvv+v g+eqrfCqqCsrfh+lsefDe+krsCr+rL++hn+rrrk+q+ Oropetium_20150105_21467A 72 TCSVDGCRSDLSRCRDYHRRHKVCEAHSKTPVVVVGGQEQRFCQQCSRFHMLSEFDEGKRSCRKRLDGHNRRRRKPQH 149 6**************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.2E-34 | 69 | 134 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.411 | 70 | 147 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.32E-40 | 72 | 152 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.5E-31 | 73 | 146 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MDWAGGASSW VAAADQGPTM VSFAGQDSST CPTAEIELQD FSFSVGRRAR PAGASSGSGR 60 RSRTAGVGGP ETCSVDGCRS DLSRCRDYHR RHKVCEAHSK TPVVVVGGQE QRFCQQCSRF 120 HMLSEFDEGK RSCRKRLDGH NRRRRKPQHD VMNLGGFFPY HQETFRTPKQ FPFSQEGGSM 180 LNVFRPNNLL AEHGSLIGSS TLSGPLDPDL LQQVYY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-29 | 64 | 146 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 129 | 146 | KRSCRKRLDGHNRRRRKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_21467A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002450775.1 | 1e-84 | putative squamosa promoter-binding-like protein 19 isoform X1 | ||||
Refseq | XP_021317606.1 | 1e-84 | putative squamosa promoter-binding-like protein 19 isoform X1 | ||||
Refseq | XP_021317607.1 | 1e-84 | putative squamosa promoter-binding-like protein 19 isoform X1 | ||||
Swissprot | Q2R3Y1 | 8e-58 | SPL19_ORYSJ; Putative squamosa promoter-binding-like protein 19 | ||||
TrEMBL | C5Y2L5 | 2e-83 | C5Y2L5_SORBI; Uncharacterized protein | ||||
STRING | Sb05g017510.1 | 4e-84 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12961 | 25 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 2e-41 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_21467A |