PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_21402A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

Protein Properties

Length: 279aa MW: 30997.3 Da PI: 10.2098

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_21402A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	100.1	1.3e-31	27	131	1	99
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f+kv tpsdv+k++rlv+pk++ae++ +e++ l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v Oropetium_20150105_21402A 27 FDKVVTPSDVGKLNRLVIPKQHAERYfpldAAANEKGLLLSFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTV 110 89*************************955556888****************************************** PP EEEE-.SS.SEE..EEEEE-S CS B3 81 vFkld.gr.sefelvvkvfrk 99 F + g+ +++l++ ++r+ Oropetium_20150105_21402A 111 SFGRGvGEqARGKLFIDWRRR 131 6558889999***9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.8E-41	22	137	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.8E-29	24	130	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.62E-26	25	112	No hit	No description
SMART	SM01019	3.0E-21	27	132	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.3E-28	27	131	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.48	27	132	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009908	Biological Process	flower development
GO:0048366	Biological Process	leaf development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MEFAAAGPIR SGGDVDDAVV VEKEHMFDKV VTPSDVGKLN RLVIPKQHAE RYFPLDAAAN 60 EKGLLLSFED RTGKPWRFRY SYWNSSQSYV MTKGWSRFVK EKRLDAGDTV SFGRGVGEQA 120 RGKLFIDWRR RPEPPAPYYH RIPLPSIPFP QWGIAAGGGA SRTVLHLPPS PSSSVNHRRH 180 EACYGPSSRQ LLFYRPHQLP ATVVLESVPV RMPTTLPVHA EQPSVASSGS KRLRLFGVNL 240 DCAGSDVGRR SAPPELXXXX XXXXXXXXKA RCSLNLDL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	2e-63	20	133	1	115	B3 domain-containing transcription factor NGA1
5os9_B	2e-63	20	133	1	115	B3 domain-containing transcription factor NGA1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_21402A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727001	1e-151	KJ727001.1 Zea mays clone pUT3977 ABI3VP1 transcription factor (ABI8) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022678485.1	1e-130	B3 domain-containing protein Os03g0120900
Swissprot	Q8LMR9	1e-100	Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBL	A0A3L6TKR2	1e-129	A0A3L6TKR2_PANMI; B3 domain-containing protein
STRING	Pavir.Ib00059.1.p	1e-128	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP583	37	168

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46870.1	8e-70	B3 family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_21402A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]