PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_21393A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

NAC

Protein Properties

Length: 650aa MW: 72373.9 Da PI: 6.6626

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_21393A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	183.2	6.3e-57	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgy 82 lppGfrFhPtdeel+ +yLk+k++g+++el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratksgy Oropetium_20150105_21393A 6 LPPGFRFHPTDEELIIYYLKRKINGRQIEL-EIIPEVDLYKCEPWDLPeKsFLPSKDLEWYFFSPRDRKYPNGSRTNRATKSGY 88 79**************************.99**********95334455777********************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wkatgkd++v s ++++vg+kktLv+y+grap+g++tdWvmheyrl Oropetium_20150105_21393A 89 WKATGKDRKVNS-HRRAVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 133 ********.9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.75E-64	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	61.601	6	156	IPR003441	NAC domain
Pfam	PF02365	9.0E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 650 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELI IYYLKRKING RQIELEIIPE VDLYKCEPWD LPEKSFLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKSGYWK ATGKDRKVNS HRRAVGMKKT LVYYRGRAPH 120 GSRTDWVMHE YRLDERECEI DTGLQDAYAL CRVFKKTAPG PKIIEHYGAV QHHIEQPQWT 180 ASSVDHRSPT LDLSCDVRGD DFESSNFSFP AEVPIESIHG GFGMHLSAPH EDGKWMQFLS 240 EDAFNATNPF FMNPTSSSFS CIPSKVDVAL ECARLQHRLS LPPLEVEDFP HDVSLDTKAS 300 VLRSNPNEVD ILQEFLSVAS ASQELINGSS SSYAAEMWPG AGTSSVSTHY SNELTSLVEL 360 GVKAKAEADN FYHIGCAGTS SGFALKSGQA DEPVRMVEIS DMEEELKEEK KQLENLRGVR 420 LHNSDLGEIA GEAGHLTDPT DAGGLDTTPI FSQSQPDDFA IGFGDINPSE PFDLYEKVDV 480 KHGLFVSRVG AAKTFFHRVE PSKKVSFHLN TVANDVSKAI EKFHFPISVT TKVSGRVSIF 540 SKFEALIRDK FLIKPSYQRS LGSKETAGSE LLKIVTLLLT PKEVTGPTAK QELVKKKAMK 600 VMKLGCCDDG NNVWLPLSKE SKGIASTFLS GKWAFLRSAL AIRTPVCNH*

Sequence ? help Back to Top

Protein Sequence Length: 650 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELI IYYLKRKING RQIELEIIPE VDLYKCEPWD LPEKSFLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKSGYWK ATGKDRKVNS HRRAVGMKKT LVYYRGRAPH  120
GSRTDWVMHE YRLDERECEI DTGLQDAYAL CRVFKKTAPG PKIIEHYGAV QHHIEQPQWT  180
ASSVDHRSPT LDLSCDVRGD DFESSNFSFP AEVPIESIHG GFGMHLSAPH EDGKWMQFLS  240
EDAFNATNPF FMNPTSSSFS CIPSKVDVAL ECARLQHRLS LPPLEVEDFP HDVSLDTKAS  300
VLRSNPNEVD ILQEFLSVAS ASQELINGSS SSYAAEMWPG AGTSSVSTHY SNELTSLVEL  360
GVKAKAEADN FYHIGCAGTS SGFALKSGQA DEPVRMVEIS DMEEELKEEK KQLENLRGVR  420
LHNSDLGEIA GEAGHLTDPT DAGGLDTTPI FSQSQPDDFA IGFGDINPSE PFDLYEKVDV  480
KHGLFVSRVG AAKTFFHRVE PSKKVSFHLN TVANDVSKAI EKFHFPISVT TKVSGRVSIF  540
SKFEALIRDK FLIKPSYQRS LGSKETAGSE LLKIVTLLLT PKEVTGPTAK QELVKKKAMK  600
VMKLGCCDDG NNVWLPLSKE SKGIASTFLS GKWAFLRSAL AIRTPVCNH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-55	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-55	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-55	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-55	1	162	12	171	NO APICAL MERISTEM PROTEIN
4dul_A	2e-55	1	162	12	171	NAC domain-containing protein 19
4dul_B	2e-55	1	162	12	171	NAC domain-containing protein 19
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_21393A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002468623.1	0.0	uncharacterized protein LOC8085734
TrEMBL	K4A6N6	0.0	K4A6N6_SETIT; Uncharacterized protein
STRING	Si034541m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6624	36	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-128	NAC domain containing protein 28

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_21393A